Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30059g00001 ATGACAAACTCATTCCGAGATAAATTAGGTCATGGAGGATATGGTATTGTGTACAAAGCAAGCTTATCAGATGGGCGTCATGTGGCCGTAAAAATAATAAACGAGTCAAAAGGAAATGGAGAAGAGTTCATAAATGAAGTTGCTAGCATCAGTAGAACATCACATGTGAACATCGTCTCACTTTTGGGTTTTTGTTATGAGAACAAAAGAGCACTAATATATGAATTCATGCCCAAAGGATCATTGGATAAGTTCATCTTTAAAAGTGGATCTCATGATATTATTTGTAATTTGGATTGGAAAACATTGTACCAAATTGCAATAGGCATTGCTCGAGGGTTAGAGTACTTGCATGAAGGATGTATTTCAAGAATTTTGCATCTTGATATCAAACCCCAAAATATTCTTTTGGATGAAGATTTTTGCCCCAAAATCTCTGATTTTGGACTTGCTAAAATATGCCAAAGAAAGGATAGTATTGTGTCCATGCTTGGCACAAGAGGAACTATAGGATACATAGCACCTGAAGTATTTAGTCGAACATATGGTGGAGTTTCTTACAAGTCTGATGTATACAGTTATGGTATGTTAATCATTGAAATGATTGGAGGAAGAAAGAATTACGACACAAAAGGGTCATGTACTACTGAAATGTTTTTTCCAGACTGGATTTATAAGGATCTCGAGCTAAGTGATAACCTTGTAAATTGTTTAGCAACTTCAGAGGAAGAAAATGATATG 741 0.3522 MTNSFRDKLGHGGYGIVYKASLSDGRHVAVKIINESKGNGEEFINEVASISRTSHVNIVSLLGFCYENKRALIYEFMPKGSLDKFIFKSGSHDIICNLDWKTLYQIAIGIARGLEYLHEGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQRKDSIVSMLGTRGTIGYIAPEVFSRTYGGVSYKSDVYSYGMLIIEMIGGRKNYDTKGSCTTEMFFPDWIYKDLELSDNLVNCLATSEEENDM 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30059g00001 247 SMART serkin_6 3 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30059g00001 247 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Trme30059g00001 247 Pfam Protein kinase domain 7 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30059g00001 247 Gene3D Transferase(Phosphotransferase) domain 1 77 246 - -
Trme30059g00001 247 SUPERFAMILY Protein kinase-like (PK-like) 5 237 IPR011009 -
Trme30059g00001 247 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 243 IPR045874 GO:0004672
Trme30059g00001 247 ProSiteProfiles Protein kinase domain profile. 3 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30059g00001 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trme30059g00001 247 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme30059g00001 247 FunFam PR5-like receptor kinase 77 246 - -
Trme30059g00001 247 PIRSF ILK 3 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30059g00001 Trme-Chr30059 19 759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30059g00001 1 234 Receptor kinase-like Gene Family AT4G18250 64.017 5.67e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme30059g00001 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30059g00001 - - mtr:11438961 427.172