Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme300224g00001 GTAGCTTTAGATAGTGATGCTTCTCTTATTAACGAAGTTGGCCTCTGGTATGTCCGTCAAAATGGATCTAAACAAATTGTTCTTGAGCACAGAACCCCGTTAATGGTGGCTGCTTCCTATGGGAGTATTGATATTCTAAAGCTTATACTCTCATGTCCAGAGGCTGATGTTAATTTCTCCTGTGGGACGGATAAAGGCACTGCTCTTCACTGTGCTGCTTCAGGGGGTTCTGTTAATGCAGTTGATGCTGTGAAACTGCTTTTATCAGCTGGCGCTGATATCAATTG 287 0.4321 VALDSDASLINEVGLWYVRQNGSKQIVLEHRTPLMVAASYGSIDILKLILSCPEADVNFSCGTDKGTALHCAASGGSVNAVDAVKLLLSAGADIN 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme300224g00001 95 SUPERFAMILY Ankyrin repeat 28 95 IPR036770 -
Trme300224g00001 95 PRINTS Ankyrin repeat signature 83 95 IPR002110 GO:0005515
Trme300224g00001 95 PRINTS Ankyrin repeat signature 30 45 IPR002110 GO:0005515
Trme300224g00001 95 PANTHER UNKEMPT FAMILY MEMBER 17 93 IPR045234 -
Trme300224g00001 95 Gene3D - 7 95 IPR036770 -
Trme300224g00001 95 SMART ANK_2a 64 95 IPR002110 GO:0005515
Trme300224g00001 95 SMART ANK_2a 29 59 IPR002110 GO:0005515
Trme300224g00001 95 Pfam Ankyrin repeats (3 copies) 25 95 IPR002110 GO:0005515
Trme300224g00001 95 ProSiteProfiles Ankyrin repeat profile. 64 95 IPR002110 GO:0005515
Trme300224g00001 95 ProSiteProfiles Ankyrin repeat region circular profile. 64 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme300224g00001 Trme-Chr300224 61 347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme300224g00001 5 95 C2H2 Transcription Factor Family AT5G12850 67.033 9.64e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme300224g00001 - - lja:Lj3g3v0838340.1 166.777