LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme30011g00001	ATGGAGGCGCAACAACAACCTCCAACGCCGTCAACCGCACCGCCGTTATCCTCCGTCGCACCTCCGCCACCACACCTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNGACTCATGGGACGAACCTTTCCCTCCGGCGTCATCAAAACTCCGTCTGATGTGCAGTTACGGCGGCCACATCGTCCCTCGTCCACATGACAAATCACTCTGTTACGTCGGTGGTGACACACGAATCGTCGTCGTTGAACGCACAACCTCACTCGCGGACCTATCCACGCGCCTCTCCAAAACCTTCCTTAACGGAAGATCTTTCACCCTCAAGTATCAACTCCCAAACGAAGACCTAGATTCGTTAATTTCAGTTACAACCGATGAAGACCTAGAAAATATGATCGATGAATACGATCGAACGAATTCGTCAAATTCATCTCTCAAACCCTCACGAATTCGTCTTTTTCTGTTTCCAACTAAACCTGAATCTGCTCACTCAATTCCTCCACAAATTCTTGATACTTCTGCGAAATCCGATTATTGGTACCGTGATGCGTTAAACGGTGCTGGATTGCTTAACCGAGGGTTTTCAGATTCTGCTTCTGTTAACTGTCTTTTAGGTCTTGATGATGATGTTGCTGCGAATAATATTGAAACTGGTTCAAGAGAAGCTCCTGAAGGTGTTTCTCAACCTGGATCTTTTGGGAATTGTAAGAATTTGAAGCAAGATGTTCACTCTGTTCCTGATTCGCCTATGTTGGAGACTACATCATCTTTTGGTTCAACTTCTTCGTCGCCGTCGTTGGCTAATTTGCCGCCGATTAGGGTGCATGTGGAAGATGGTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANCAGCAGCAGCAGGATCAGAAGGTTTTGGGAATTGAGGAACAGTTTGCTCAAATGGGAGTTGTTGTTGGTGGAGTTGGACAGAAGCAACAGGATGAGGGATTTGCTGTGATGTCTTCGCCGCCTCATCCTCCGGTGCCTACTACGCTTTCTGTGGCGGCGGTCGGTGTTCCGGTGGTTATTGGTGATTATCAGAATAGGGTTTTCTCTGATGATGAGAGATCGGATCATGGAGTGGCTGTAGGATATAGAAAACCACCAACTCCTC	1159	0.4383	MEAQQQPPTPSTAPPLSSVAPPPPHLXXXXXXXXXXXXXXXDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERTTSLADLSTRLSKTFLNGRSFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTNSSNSSLKPSRIRLFLFPTKPESAHSIPPQILDTSAKSDYWYRDALNGAGLLNRGFSDSASVNCLLGLDDDVAANNIETGSREAPEGVSQPGSFGNCKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGXXXXXXXXXXXXXXXQQQQDQKVLGIEEQFAQMGVVVGGVGQKQQDEGFAVMSSPPHPPVPTTLSVAAVGVPVVIGDYQNRVFSDDERSDHGVAVGYRKPPTP	386

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme30011g00001	386	MobiDBLite	consensus disorder prediction	367	386	-	-
	Trme30011g00001	386	Pfam	PB1 domain	70	160	IPR000270	GO:0005515
	Trme30011g00001	386	Gene3D	-	74	159	-	-
	Trme30011g00001	386	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	74	161	-	-
	Trme30011g00001	386	Coils	Coil	299	304	-	-
	Trme30011g00001	386	MobiDBLite	consensus disorder prediction	1	34	-	-
	Trme30011g00001	386	CDD	PB1_UP2	58	159	-	-
	Trme30011g00001	386	SUPERFAMILY	CAD & PB1 domains	70	169	-	-
	Trme30011g00001	386	SMART	PB1_new	69	159	IPR000270	GO:0005515
	Trme30011g00001	386	PANTHER	OS05G0427100 PROTEIN-RELATED	42	336	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme30011g00001	Trme-Chr30011	19	1177	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme30011g00001	52	231	MAP Kinase Kinase Kinase	AT1G79570	34.973	9.21e-26	107

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme30011g00001	-		-	vvo:131643075	568.926

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