Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30011g00001 ATGGAGGCGCAACAACAACCTCCAACGCCGTCAACCGCACCGCCGTTATCCTCCGTCGCACCTCCGCCACCACACCTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNGACTCATGGGACGAACCTTTCCCTCCGGCGTCATCAAAACTCCGTCTGATGTGCAGTTACGGCGGCCACATCGTCCCTCGTCCACATGACAAATCACTCTGTTACGTCGGTGGTGACACACGAATCGTCGTCGTTGAACGCACAACCTCACTCGCGGACCTATCCACGCGCCTCTCCAAAACCTTCCTTAACGGAAGATCTTTCACCCTCAAGTATCAACTCCCAAACGAAGACCTAGATTCGTTAATTTCAGTTACAACCGATGAAGACCTAGAAAATATGATCGATGAATACGATCGAACGAATTCGTCAAATTCATCTCTCAAACCCTCACGAATTCGTCTTTTTCTGTTTCCAACTAAACCTGAATCTGCTCACTCAATTCCTCCACAAATTCTTGATACTTCTGCGAAATCCGATTATTGGTACCGTGATGCGTTAAACGGTGCTGGATTGCTTAACCGAGGGTTTTCAGATTCTGCTTCTGTTAACTGTCTTTTAGGTCTTGATGATGATGTTGCTGCGAATAATATTGAAACTGGTTCAAGAGAAGCTCCTGAAGGTGTTTCTCAACCTGGATCTTTTGGGAATTGTAAGAATTTGAAGCAAGATGTTCACTCTGTTCCTGATTCGCCTATGTTGGAGACTACATCATCTTTTGGTTCAACTTCTTCGTCGCCGTCGTTGGCTAATTTGCCGCCGATTAGGGTGCATGTGGAAGATGGTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANCAGCAGCAGCAGGATCAGAAGGTTTTGGGAATTGAGGAACAGTTTGCTCAAATGGGAGTTGTTGTTGGTGGAGTTGGACAGAAGCAACAGGATGAGGGATTTGCTGTGATGTCTTCGCCGCCTCATCCTCCGGTGCCTACTACGCTTTCTGTGGCGGCGGTCGGTGTTCCGGTGGTTATTGGTGATTATCAGAATAGGGTTTTCTCTGATGATGAGAGATCGGATCATGGAGTGGCTGTAGGATATAGAAAACCACCAACTCCTC 1159 0.4383 MEAQQQPPTPSTAPPLSSVAPPPPHLXXXXXXXXXXXXXXXDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERTTSLADLSTRLSKTFLNGRSFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTNSSNSSLKPSRIRLFLFPTKPESAHSIPPQILDTSAKSDYWYRDALNGAGLLNRGFSDSASVNCLLGLDDDVAANNIETGSREAPEGVSQPGSFGNCKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGXXXXXXXXXXXXXXXQQQQDQKVLGIEEQFAQMGVVVGGVGQKQQDEGFAVMSSPPHPPVPTTLSVAAVGVPVVIGDYQNRVFSDDERSDHGVAVGYRKPPTP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30011g00001 386 MobiDBLite consensus disorder prediction 367 386 - -
Trme30011g00001 386 Pfam PB1 domain 70 160 IPR000270 GO:0005515
Trme30011g00001 386 Gene3D - 74 159 - -
Trme30011g00001 386 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 74 161 - -
Trme30011g00001 386 Coils Coil 299 304 - -
Trme30011g00001 386 MobiDBLite consensus disorder prediction 1 34 - -
Trme30011g00001 386 CDD PB1_UP2 58 159 - -
Trme30011g00001 386 SUPERFAMILY CAD & PB1 domains 70 169 - -
Trme30011g00001 386 SMART PB1_new 69 159 IPR000270 GO:0005515
Trme30011g00001 386 PANTHER OS05G0427100 PROTEIN-RELATED 42 336 - -
Trme30011g00001 386 MobiDBLite consensus disorder prediction 251 272 - -
Trme30011g00001 386 MobiDBLite consensus disorder prediction 8 22 - -
Trme30011g00001 386 MobiDBLite consensus disorder prediction 223 276 - -
Trme30011g00001 386 ProSiteProfiles PB1 domain profile. 54 161 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30011g00001 Trme-Chr30011 19 1177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30011g00001 52 231 MAP Kinase Kinase Kinase AT1G79570 34.973 9.21e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30011g00001 - - vvo:131643075 568.926