Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30002g00001 GTATCAAGATCTATAGGAGATGCATATTTGAAACGGCCGGAGTTCTCCTTTGATCCATCATTCCCGAAGTTTCACTTGTCTGATCCTATCCGCCGGCCAGTGCTATCAGCAGAACCATCTATATGTTCAAGAGTTTTACAACCTAACGATAAATTCGTTATATTTGCATCTGACGGCCTTTGGGAACACATGACAAATCAGGAAGCTGCTGAGATTGTTCATAGCAACCCTAGAACTGGAATTGCAAGAAGACTTCTTCAGACTGCTTTGAATGAGGCAGCAAGGAAAAGGGAAATGAGATATAAAGATCTGCTGAAGGTTGAAAAGGGGATTAGGCGATTTTTCCACGATGATATCACTGTCGTTGTTATCTTCATCGACCATGAGTTGCAAAAGCAGAATGTTAATGTTCCTGAGTTATCGATAAAAGGTTTTATCGACACAGTTGGACCATCAAAATTTAGTAGTTTCCAAGAAATGGAATGA 486 0.4033 VSRSIGDAYLKRPEFSFDPSFPKFHLSDPIRRPVLSAEPSICSRVLQPNDKFVIFASDGLWEHMTNQEAAEIVHSNPRTGIARRLLQTALNEAARKREMRYKDLLKVEKGIRRFFHDDITVVVIFIDHELQKQNVNVPELSIKGFIDTVGPSKFSSFQEME 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30002g00001 161 CDD PP2Cc 1 126 IPR001932 -
Trme30002g00001 161 PANTHER PROTEIN PHOSPHATASE 1 127 IPR015655 GO:0004722|GO:0006470
Trme30002g00001 161 Pfam Protein phosphatase 2C 1 95 IPR001932 -
Trme30002g00001 161 SUPERFAMILY PP2C-like 1 127 IPR036457 -
Trme30002g00001 161 Gene3D - 1 137 IPR036457 -
Trme30002g00001 161 ProSiteProfiles PPM-type phosphatase domain profile. 1 126 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30002g00001 Trme-Chr30002 202 815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30002g00001 1 157 PP2C-type Phosphatase Gene Family AT5G06750 72.785 1.32e-78 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30002g00001 K01102 - gmx:100778238 280.411