Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29999g00001 ATGGATCAGCAAAACCAAAGTATGCGTTTGGTTCTTTCTACTGATGCTAAGCCTAGGCTGAAATGGACTCATGAACTTCACCAAAGATTTGCTGAGGCAATTAACCAGCTTGGAGGTGCAGAAAAGGCAACACCAAAGAGTCTTATGAGGGCTATGGGGATTCCAGGACTCACTTTATACCATCTAAAGAGCCACTTACAGAAATATAGACTTGGCAAAAGCCAACAGGTAGAAACATGTTCTGACAACAAACAAGATTACATAGAAATCCAAAGCACTGGAAGTCAATGCAGAAGAGAAATTAGTGTTGGAAACCAGAATCAAACGACTGAGTAA 336 0.4077 MDQQNQSMRLVLSTDAKPRLKWTHELHQRFAEAINQLGGAEKATPKSLMRAMGIPGLTLYHLKSHLQKYRLGKSQQVETCSDNKQDYIEIQSTGSQCRREISVGNQNQTTE 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29999g00001 111 Gene3D - 16 74 - -
Trme29999g00001 111 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Trme29999g00001 111 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 89 IPR044848 GO:0003700
Trme29999g00001 111 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Trme29999g00001 111 FunFam Myb family transcription factor 16 74 - -
Trme29999g00001 111 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29999g00001 Trme-Chr29999 408 1031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29999g00001 1 84 G2-like Transcription Factor Family AT1G69580 69.048 6.48e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme29999g00001 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29999g00001 - - qsa:O6P43_025475 180.644