Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29985g00001 GTTACTGGTGGCAATGCTGTCGATCTTTCAGGTAGTTTTGTTACAGCTACTAATGGATATCCTTTGAATTTGGGTAATTGGGTTGCTGGTAATGCTTTGGATAACAATAATCTTCAGTACAGTAGTGGCAGAATAATTAGCAACGGTGGTGATCGTACTGGTGGTGTTGGGTTGGTTGGGACTGGTTCCAATCCCCCTGCTAACCAGAGGGTCGATCAGGCGAGTGAAAAAGGTGGGGATGATTCAGTTTCGGGGCAGAAATTGAAGTTCATGTGCAGTTATGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGGTATGTTGGTGGGCAGACTAGGATAATAAGTGTCAAGAGAGATGTGAGTTTTAATGATTTAGTGCAAAAGATGGTCAATACTTTTGGGCAACCTGTGGTTATCAAATATCAGCTTCCCGGAGAGGATCTTGATGCATTGGTATCAGTTTCCTGTGCTGATGATCTGGATAATATGATGGAGGAGTATGAAAGGTTGATTGAGAGGTCTTCAGATGGTTCTCCTAAATTAAGGGTCTTTCTTTTTTCTGCTTCGGAATTTGATCCTTCTGGTCTGCTACAGTTTGTAAATTTACATGATGGTGGGCAGAAATATGTTGAAGCTGTGAATGGAATTGCTGAGAGGGTTAATGGCAAGCTAACAAGGAAAGGGAGTTTTACAAGTGCTGCTTCTACTCAAAATTCTGATTTGAGTGGGTTAGAGGCTCCTGATAGCACAAATGCTGCTCATGCAGATTTTAATGGCCCACCTATGTCCAGCATTTTATCACCCGATACGAATATTGCCGCACCTAATGATGCTGCTACTACAAATGTTATGGTTTCTGAGCCTGTTGAATCAGTATGCTCAGATGTTTCTGCAGTTTCATTGGGTATACCTGTGGCTGATTCAGGTCCAACTCATACTCCACCTTTCCATAATGAGGTTGAGGTAGAGAAGTCTGTGCCCACTACTTTATCCCAGAAGCAGTTTGTGTTGCAGCAGTCTGGAATGCAAATTCCACCCTCTGCACCTTTGCAGGCATTTGTTGATCCTCGACAGGAAGTTCTGAACCATGCAGAATATGTCCAGATGCCTGCCCATATGGGATTCCCAAATCCTCAGTTTATAGGTAGGCCTGGGACTATCTACTCT 1176 0.4345 VTGGNAVDLSGSFVTATNGYPLNLGNWVAGNALDNNNLQYSSGRIISNGGDRTGGVGLVGTGSNPPANQRVDQASEKGGDDSVSGQKLKFMCSYGGKILPRPSDGMLRYVGGQTRIISVKRDVSFNDLVQKMVNTFGQPVVIKYQLPGEDLDALVSVSCADDLDNMMEEYERLIERSSDGSPKLRVFLFSASEFDPSGLLQFVNLHDGGQKYVEAVNGIAERVNGKLTRKGSFTSAASTQNSDLSGLEAPDSTNAAHADFNGPPMSSILSPDTNIAAPNDAATTNVMVSEPVESVCSDVSAVSLGIPVADSGPTHTPPFHNEVEVEKSVPTTLSQKQFVLQQSGMQIPPSAPLQAFVDPRQEVLNHAEYVQMPAHMGFPNPQFIGRPGTIYS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29985g00001 392 MobiDBLite consensus disorder prediction 233 267 - -
Trme29985g00001 392 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 107 191 - -
Trme29985g00001 392 CDD PB1_UP2 91 189 - -
Trme29985g00001 392 PANTHER OS05G0427100 PROTEIN-RELATED 81 340 - -
Trme29985g00001 392 MobiDBLite consensus disorder prediction 56 83 - -
Trme29985g00001 392 Pfam PB1 domain 107 189 IPR000270 GO:0005515
Trme29985g00001 392 Gene3D - 108 191 - -
Trme29985g00001 392 MobiDBLite consensus disorder prediction 233 249 - -
Trme29985g00001 392 SMART PB1_new 102 191 IPR000270 GO:0005515
Trme29985g00001 392 SUPERFAMILY CAD & PB1 domains 103 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29985g00001 Trme-Chr29985 2 1177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29985g00001 21 376 MAP Kinase Kinase Kinase AT3G46920 41.873 1.56e-64 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29985g00001 - - gmx:100776264 514.612