Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29956g00001 ATGGGTATYGATGATTACTACAAAATACTAAAGGTGAATCGTGATGYAACCTATGARGAGTTGAACAAATCGTTTAACAATTTATCWTTGAAATGGCACCCTGATAAGATTAAACAATACCCTTTAAGGAAACAAGAGTTTGAGACAAAGTTTAAGAAAATTTCTGAAGCTTATGATGTTCTTAGTGATCCTAGGAAGCGTCAGATCTATGATAAGTATGGCAAATATCCTATGAATTTTGATGGTTTCAATGATGGTGATGGGAATAATATTAAGGTAGATGAAGCTGTTGGAGCTGTTGAGACTGAGTTTTATTGTACTCTTGAAGAGCTTTATAGGGGTTGCAGAAAGAAGGTTAAGATCATAAGGACTGTTCCTGATGGGTTTGGGTAA 393 0.3461 MGIDDYYKILKVNRDXTYEELNKSFNNLSLKWHPDKIKQYPLRKQEFETKFKKISEAYDVLSDPRKRQIYDKYGKYPMNFDGFNDGDGNNIKVDEAVGAVETEFYCTLEELYRGCRKKVKIIRTVPDGFG 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29956g00001 130 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Trme29956g00001 130 Gene3D - 98 130 - -
Trme29956g00001 130 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Trme29956g00001 130 Gene3D DnaJ domain 1 86 IPR036869 -
Trme29956g00001 130 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 127 - -
Trme29956g00001 130 CDD DnaJ 5 63 IPR001623 -
Trme29956g00001 130 PRINTS DnaJ domain signature 25 40 IPR001623 -
Trme29956g00001 130 PRINTS DnaJ domain signature 7 25 IPR001623 -
Trme29956g00001 130 PRINTS DnaJ domain signature 66 85 IPR001623 -
Trme29956g00001 130 PRINTS DnaJ domain signature 46 66 IPR001623 -
Trme29956g00001 130 Pfam DnaJ domain 5 71 IPR001623 -
Trme29956g00001 130 SUPERFAMILY Chaperone J-domain 3 86 IPR036869 -
Trme29956g00001 130 SMART dnaj_3 4 66 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29956g00001 Trme-Chr29956 37 429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29956g00001 6 73 C2H2 Transcription Factor Family AT1G74250 34.783 3.09e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29956g00001 K09510 - gmx:100778440 153.295