Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29954g00001 CAACTTTTACAGGTACCAAACCCTAATTGGCCGGAGAAAAAGGCGATCGATGAGACGTCGTGGACGGATGTTGAGTACTGTAAATTGAGGGGGAAGTGGTATCCGGTGTCGAAGACCGAGGCTGAGAAGGCGGCGTGGGAATTTCGAGAGAAAAATGATGGTATTGATGTGGTGGCAATTCATCCGGGGACTTGTTTGGGGGAGTTGATACAGAAGGAGATGAATGCAAGTTCAGCGGTGTTGCAGAGGTTGATGATGGGGAGCAAGGATACTCAAGAGTGTTATTGGTTGGGGGCTGTTCATGTTAAAGATGTTGCTAGAGCTCATGTGTTGGTTTATGAAACTCCAACTGCTGCTGGTAGATATCTTTGTGTTAATGGGATATATCAGTTTTCTAGTTTTGCTAAAACTGTCTCTGAATTGTATCCTGATTTTCCTATTCACAGCTGTGGGGATAACCTAGTGCGCCTAACGGGGGTTAGAGACCTTAGGCTTAGTGCGCCTAGTGGGGGTTAA 516 0.4632 QLLQVPNPNWPEKKAIDETSWTDVEYCKLRGKWYPVSKTEAEKAAWEFREKNDGIDVVAIHPGTCLGELIQKEMNASSAVLQRLMMGSKDTQECYWLGAVHVKDVARAHVLVYETPTAAGRYLCVNGIYQFSSFAKTVSELYPDFPIHSCGDNLVRLTGVRDLRLSAPSGG 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29954g00001 171 Gene3D - 3 164 - -
Trme29954g00001 171 Pfam NAD dependent epimerase/dehydratase family 33 118 IPR001509 -
Trme29954g00001 171 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 149 IPR036291 -
Trme29954g00001 171 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 15 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29954g00001 Trme-Chr29954 1 757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29954g00001 5 157 Monolignol Biosynthesis Gene Families AT2G02400 59.146 1.22e-69 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29954g00001 - - gmx:100795399 230.72