Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29948g00001 ATGCAGGAATTCAAAGACACACTTAAATATATCGCAAGCATACGTTCAAGAGCAGAACCTTATGGAATTTGCCGTATAGTCCCTCCTACTAGCTGGGAACCACCATGTACTCCTGAGAAAAAGAATGTATTGGAAAACTCTGAATTTGTTGCTCAAATTCAGCGAATTGATGGGCACCAATTTCAGCATGCACCAGAAACTATGGCTAGCTCTCATGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGCCGCGGACTCTCATCTTGGTAATAGAAGCACTTGCACCCCTAATAGCGGGAATGTTGAAGGCGGTGACAATGAGACTGAACATGGTCCTAAATTCACTATCAAAACATTTAAGAAATTGGCAGATGAATTTGAAATCCAATACTTCAACTACAAGAATAAGAATAAGATTATGGGTTCCGATAAAAACTCAGCCATACATCTACAGCACTGGGAACCATCTGTTGAGAATATTGAAGATGAATACAGACGTATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTCTGTGGTGACACTTTGGAGGCTGGAGAATTTAGCAGTGGATTTCCAATTCCAACGGTTTCTGATCCTCAAAAGGCGAATACTTACCCTGAATATTTGAATTCTGGATG 650 0.3969 MQEFKDTLKYIASIRSRAEPYGICRIVPPTSWEPPCTPEKKNVLENSEFVAQIQRIDGHQFQHAPETMASSHDTTETKRRKVMKVAADSHLGNRSTCTPNSGNVEGGDNETEHGPKFTIKTFKKLADEFEIQYFNYKNKNKIMGSDKNSAIHLQHWEPSVENIEDEYRRIVQNPTEEIEVLCGDTLEAGEFSSGFPIPTVSDPQKANTYPEYLNSG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29948g00001 216 MobiDBLite consensus disorder prediction 91 107 - -
Trme29948g00001 216 ProSiteProfiles JmjN domain profile. 1 35 IPR003349 -
Trme29948g00001 216 Pfam jmjN domain 1 28 IPR003349 -
Trme29948g00001 216 SMART JmjN_1 1 34 IPR003349 -
Trme29948g00001 216 MobiDBLite consensus disorder prediction 193 216 - -
Trme29948g00001 216 MobiDBLite consensus disorder prediction 91 115 - -
Trme29948g00001 216 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 214 - -
Trme29948g00001 216 MobiDBLite consensus disorder prediction 197 216 - -
Trme29948g00001 216 Gene3D Cupin 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29948g00001 Trme-Chr29948 393 1147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29948g00001 2 205 JUMONJI Transcription Factor Family AT2G38950 39.320 1.29e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme29948g00001 JmjN 1.7e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29948g00001 K11446 - gmx:100804864 303.138