Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme298795g00001 ATGAATGAAGTTGCAAGTATCTGTGGAACTTCTCATGTTAACATTGTTACTCTTCTTGGGTTCTGTTTGGAAGGTTCCAAAAGAGCTTTAGTTTATGAGTTTATGCATAATGGCTCTCTTGAGAAGTTTATCTTTGAGGAAAATGACCATATTCAAGATCTCCAATGGGATTGCCAAACTTTGTACCATATCACAATTGGTGTAGCTCGAGGCTTAGAATACTTGCACAAAG 232 0.3707 MNEVASICGTSHVNIVTLLGFCLEGSKRALVYEFMHNGSLEKFIFEENDHIQDLQWDCQTLYHITIGVARGLEYLHK 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme298795g00001 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme298795g00001 77 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 77 IPR045874 GO:0004672
Trme298795g00001 77 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
Trme298795g00001 77 Pfam Protein tyrosine and serine/threonine kinase 1 77 IPR001245 GO:0004672|GO:0006468
Trme298795g00001 77 SUPERFAMILY Protein kinase-like (PK-like) 1 76 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme298795g00001 Trme-Chr298795 90 321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme298795g00001 1 76 Receptor kinase-like Gene Family AT5G38260 63.158 5.59e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme298795g00001 PK_Tyr_Ser-Thr 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme298795g00001 - - lja:Lj0g3v0331979.1 124.405