Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29871g00001 GGCGGGAAATACACAGAGGAAGATGCAAAAGCTATCCTGAGACAAATACTGAATGCTGCTGCATTTTGCCATCTACAGGGTGTTGTACATCGTGATCTTAAACCGGAGAACTTCTTGTTCGCATCCACGGATGAAAACTCAGAACTGAAGGCCATAGACTTTGGGCTGTCAGATTTTGTTAAACTAGATGAAAGGCTCAATGATATTGTGGGTAGTGCATACTACGTGGCTCCTGAAGTTCTACATAGAGCTTATAGTACCGAGGCTGATGTCTGGAGTCATCCATGGATTAAAAACTACGAAGACGCAGAATTGCCTTTGGATATTTTAGTATTCAAGCTCATGAAGACATACATGCGTTCTTCATCTCTAAGAAGAGCTGCTTTAAGGGTGAGTCTCTTTATATAA 408 0.4167 GGKYTEEDAKAILRQILNAAAFCHLQGVVHRDLKPENFLFASTDENSELKAIDFGLSDFVKLDERLNDIVGSAYYVAPEVLHRAYSTEADVWSHPWIKNYEDAELPLDILVFKLMKTYMRSSSLRRAALRVSLFI 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29871g00001 135 SUPERFAMILY Protein kinase-like (PK-like) 3 94 IPR011009 -
Trme29871g00001 135 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 93 - -
Trme29871g00001 135 SMART serkin_6 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29871g00001 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29871g00001 135 Pfam Protein kinase domain 3 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29871g00001 135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Trme29871g00001 135 Gene3D Transferase(Phosphotransferase) domain 1 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29871g00001 Trme-Chr29871 96 1168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29871g00001 1 93 EF-hand Containing Proteins AT1G49580 80.645 2.86e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme29871g00001 Pkinase 6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29871g00001 K13412 - gmx:100815721 180.259