Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29859g00001 AGGTCAATGATGGGCATGGAGGAAGGCTCAAAAAGGAGACCTTTCTTCAGCTCGCCGGATGAACTGTATGATGAGGAGTATTACGAGGAGCAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAGACTCAATTGGCCAAGAAGCTAGGGTTGCAGCCTAGACAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACCAAACAACTTGAAAGAGATTATGATGTTCTTAAATCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTACTTATATACATGTGTTCTATTAAAAGAATTGAATCATTATATGATTAA 420 0.431 RSMMGMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIMKENEKLKSEVLIYMCSIKRIESLYD 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29859g00001 139 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Trme29859g00001 139 Pfam Homeobox associated leucine zipper 90 124 IPR003106 GO:0006355|GO:0043565
Trme29859g00001 139 SUPERFAMILY Homeodomain-like 23 92 IPR009057 -
Trme29859g00001 139 Coils Coil 103 123 - -
Trme29859g00001 139 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Trme29859g00001 139 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Trme29859g00001 139 FunFam Homeobox-leucine zipper protein HAT5 28 92 - -
Trme29859g00001 139 CDD homeodomain 35 91 IPR001356 GO:0003677
Trme29859g00001 139 SMART HOX_1 33 94 IPR001356 GO:0003677
Trme29859g00001 139 Pfam Homeodomain 35 88 IPR001356 GO:0003677
Trme29859g00001 139 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Trme29859g00001 139 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 125 IPR045224 GO:0003700
Trme29859g00001 139 Gene3D - 28 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29859g00001 Trme-Chr29859 173 1141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29859g00001 1 124 Homeobox Transcription Factor Family AT3G01470 83.065 2.99e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trme29859g00001 Homeodomain 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29859g00001 K09338 - gmx:100813420 222.246