Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29857g00001 GGAGTTGACGATAGTGCTAATGCACTGGACCTTAAAATGGACAAGATTTTAGAGGATTCAGTTCCTTGTAAGATTCGAGCTAAGCGTGGTTTTGCTACACATCCGAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGTATTAGTGACCGCATAAGAAAACTTCAAGAACTTGTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANCCCTTAA 225 0.3422 GVDDSANALDLKMDKILEDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIRKLQELVXXXXXXXXXXXXXXXP 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29857g00001 74 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 59 IPR036638 GO:0046983
Trme29857g00001 74 Coils Coil 44 58 - -
Trme29857g00001 74 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29857g00001 Trme-Chr29857 215 574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29857g00001 9 58 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 84.000 3.68e-25 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29857g00001 - - lja:Lj3g3v3754390.1 86.2705