Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29833g00001 GTCATTAAGAATGAAGACCTTGAAGAGTTGAGGGAACTAGGTTCTGGTACATTTGGGACTGTGTATCATGGAAAATGGAGAGGATCAGATGTTGCTATCAAAAGAATAAAGAAGAGCTGCTTCACCGGTCGATCATCTGAGCAAGAGAGACTGACTGCAGAGTTCTGGCGAGAAGCTGACATTCTTTCGAAGCTTCATCATCCAAATGTGGTCGCATTTTACGGTGTAGTACAGGATGGACCAGGAGGAACAATGGCTACTGTTACAGAATACATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAG 317 0.4385 VIKNEDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFTGRSSEQERLTAEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKD 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29833g00001 105 Pfam Protein tyrosine and serine/threonine kinase 8 104 IPR001245 GO:0004672|GO:0006468
Trme29833g00001 105 ProSitePatterns Protein kinases ATP-binding region signature. 13 38 IPR017441 GO:0005524
Trme29833g00001 105 PANTHER SERINE-THREONINE PROTEIN KINASE 3 101 - -
Trme29833g00001 105 SUPERFAMILY Protein kinase-like (PK-like) 4 103 IPR011009 -
Trme29833g00001 105 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1 94 - -
Trme29833g00001 105 ProSiteProfiles Protein kinase domain profile. 7 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29833g00001 105 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29833g00001 Trme-Chr29833 233 707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29833g00001 1 105 MAP Kinase Kinase Kinase AT1G79570 92.381 2.52e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trme29833g00001 PK_Tyr_Ser-Thr 7.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29833g00001 - - tpra:123895538 216.853