Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29805g00001 ACCACCACCACAAGCAATGACTCTCTTTCGGTATCTCTCATTCCGACGAAACTATCACCACCGCCGACAACGAATACACTAAGCCGCGTCGGCAGTGGTGCTAGCGCCGTCGTGGATCCCGAAATTTGTGGCGGATCCGGTGAGGCTGAGTCTCGTAAACTTCCATCGTCGAAATATAAAGGCGTTGTTCCACAGCCGAACGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGCGCGTGTGGCTTGGCACGTTCAATGAAGAAGATGAAGCTGCAAGAGCTTACGATATCGCCGCCTTGAGATTTCGTGGAAAAGACGCCGTTACAAATTCTAAAACTCTCACCGGCGCAAGTAACGATACCGACGAAGCTGAAGCCGAGTTTCTGAACTCGCATTCCAAATCTGAGATCGTTGATATGCTAAGAAAACATACCTACGACGATGAGCTTAAGCAGAGCATGCGTGACACGTGCGGTGGAAGACAGCGGCGTAACGGAGATTCCGCTGGTGCTGCGTCACGTGGCGCGTGCGATGTTAAAGCGCGTGAACAGTTGTTTGAGAAAACGGTTACGCCGAGTGACGTTGGGAAATTGAATCGGTTGGTTATACCAAAACAGCACGCGGAGAAGCACTTTCCGTTAAATGCTGTCGCTGTTGCCGTCTCCGGCGAGGGAATCTCGCCGTCTGTGGCGGCGGCGAAGGGTTTACTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTAACCAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTCCGAGCCGGTGATGCGGTTCGGTTTTTTAGATCGACCGGACCGGATAGACAGCTCTACATTGACTGTAAAGCAAGGAGCAGTAGTGTTGTCGGTGGTGAAGTTGATAGTAATAAAACCGGTGGTTTGTTTATTTCGGTCCGACCGGTAGTTGAACCGGTTCAGATGGTTCGGCTTTTTGGGGTGAATCTTTTGAAACTACCTGGTTCTGATGGTACTGTTGGTGGTAGCTGCAATGGGAAGAGAAAAGAAATGGAATTTTTTGCTTTAGAATGCACCAAAAAACCAAAGATAATTGGAGCATTATAA 1137 0.489 TTTTSNDSLSVSLIPTKLSPPPTTNTLSRVGSGASAVVDPEICGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNSKTLTGASNDTDEAEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRDTCGGRQRRNGDSAGAASRGACDVKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVAVSGEGISPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSSSVVGGEVDSNKTGGLFISVRPVVEPVQMVRLFGVNLLKLPGSDGTVGGSCNGKRKEMEFFALECTKKPKIIGAL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29805g00001 378 MobiDBLite consensus disorder prediction 41 60 - -
Trme29805g00001 378 MobiDBLite consensus disorder prediction 1 32 - -
Trme29805g00001 378 FunFam AP2 domain-containing protein RAP2.8 57 114 - -
Trme29805g00001 378 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Trme29805g00001 378 ProSiteProfiles B3 DNA-binding domain profile. 187 303 IPR003340 GO:0003677
Trme29805g00001 378 MobiDBLite consensus disorder prediction 157 176 - -
Trme29805g00001 378 SUPERFAMILY DNA-binding pseudobarrel domain 185 301 IPR015300 -
Trme29805g00001 378 CDD B3_DNA 186 288 IPR003340 GO:0003677
Trme29805g00001 378 SMART rav1_2 58 119 IPR001471 GO:0003700|GO:0006355
Trme29805g00001 378 SUPERFAMILY DNA-binding domain 57 111 IPR016177 GO:0003677
Trme29805g00001 378 Gene3D - 176 310 IPR015300 -
Trme29805g00001 378 MobiDBLite consensus disorder prediction 1 33 - -
Trme29805g00001 378 Pfam AP2 domain 57 105 IPR001471 GO:0003700|GO:0006355
Trme29805g00001 378 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 53 351 IPR044800 GO:0003700
Trme29805g00001 378 ProSiteProfiles AP2/ERF domain profile. 58 113 IPR001471 GO:0003700|GO:0006355
Trme29805g00001 378 SMART B3_2 187 302 IPR003340 GO:0003677
Trme29805g00001 378 CDD AP2 57 111 IPR001471 GO:0003700|GO:0006355
Trme29805g00001 378 Pfam B3 DNA binding domain 187 293 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29805g00001 Trme-Chr29805 1 1137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29805g00001 2 378 B3 DNA Binding Superfamily AT1G25560 57.949 1.15e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Trme29805g00001 B3 2.1e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29805g00001 K09287 - gmx:100789009 523.472