Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29781g00001 CTTAATTCATTGAACTTGTCTTCAAATATCCTTTCTGGTGAGATTCCATCAAGTTTATCATCTCTAACACTTAGCCTTCTTGATTTATCAAACAATAAGTTGTTTGGTTCCATACCAAATTCACTTGCTATTTCAGCTTTCAAAGACGGTTTCATGGGAAATCCTAGACTATGCAGCCAGATTTTGAAGAATTTTCAACCATGTTCAATGGAATCTAGCAGCTCGAAGCGACTCCGAAACTTCGTGTTCTTTTTCATTGCTGGTTTAATGGTTCTTGTTGTTTCATTTGCATGTTTCCTCTTCATGAGACTTAAACAGAAGAACAAGTTCGATAACCAAGTAGTCAAGACTAATTCATGGAATTTCAAGAAATATCATGTGCTAAACATCAATGAGAATGAAATTATTGATGGAATCAAAGCTGAGAATGTGATTGGAAAAGGAGGGTCAGGGAATGTTTACAAAGTTGAACTCAAAAGTGGTGAAGTTTTTGCTGTCAAACACATTTGGACTTCAAATTCAAGAAGTGATTATAGAAGCAGTTCAGCAATGTTAAAAAGGAGTTCAAATTCATCTGAGTATGATGCTGAGGTAGCAACTTTGAGTTCTATAAGGCATGTGAATGTGGTGAAGCTATATTGCAGTATCACAAGTGAAGATAGTAGTTTACTTGTTTATGAGTTTTTACCAAATGGAAGTTTGTGGGAAAGGTTGCATAATTGTAAGAAGACTCAGATGGGTTGGGATGTTAGGTATGACATTGCATTAGGTGCTGCTAGAGGATTGGAGTATTTGCATCATTGTTGTGATAGAACTGTTATGCATAGGGATGTTAAATCAAGTAACATATTGCTTGATGAAGAATGGAAGCCAAGGATTGCGGATTTTGGACTTGCTAAGATTGTGCAAGGAGGAGCTGGTAATTGGACTCATGTCATTGCTGGAACACTTGGCTACATGGCTCCTGGTAAGCCTTAA 978 0.3691 LNSLNLSSNILSGEIPSSLSSLTLSLLDLSNNKLFGSIPNSLAISAFKDGFMGNPRLCSQILKNFQPCSMESSSSKRLRNFVFFFIAGLMVLVVSFACFLFMRLKQKNKFDNQVVKTNSWNFKKYHVLNINENEIIDGIKAENVIGKGGSGNVYKVELKSGEVFAVKHIWTSNSRSDYRSSSAMLKRSSNSSEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHNCKKTQMGWDVRYDIALGAARGLEYLHHCCDRTVMHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNWTHVIAGTLGYMAPGKP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29781g00001 325 SUPERFAMILY L domain-like 1 42 - -
Trme29781g00001 325 PANTHER LEUCINE RICH REPEAT KINASE 2 1 322 - -
Trme29781g00001 325 FunFam Receptor-like protein kinase HAIKU2 122 228 - -
Trme29781g00001 325 SMART serkin_6 139 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29781g00001 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Trme29781g00001 325 SUPERFAMILY Protein kinase-like (PK-like) 128 322 IPR011009 -
Trme29781g00001 325 ProSitePatterns Protein kinases ATP-binding region signature. 145 167 IPR017441 GO:0005524
Trme29781g00001 325 Gene3D Ribonuclease Inhibitor 1 77 IPR032675 -
Trme29781g00001 325 Gene3D Transferase(Phosphotransferase) domain 1 120 323 - -
Trme29781g00001 325 Pfam Protein kinase domain 142 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29781g00001 325 FunFam Protein kinase superfamily protein 229 301 - -
Trme29781g00001 325 ProSiteProfiles Protein kinase domain profile. 139 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29781g00001 Trme-Chr29781 2 979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29781g00001 1 324 Receptor kinase-like Gene Family AT1G09970 56.881 1.84e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme29781g00001 Pkinase 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29781g00001 - - lja:Lj4g3v1120510.2 503.827