Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme297593g00001 ATGGGAGGGGCTTCACTGCCTCCGGGTTTTCGATTCCATCCAACTGATGAAGAACTGATAGGATATTACCTAAAGAGAAAAGTTGAGGGACTTGAAATTGAGCTTGAAGTTATACCTGTGATTGATTTCTACAAATTTGATCCATGGGAGTTACCTG 157 0.414 MGGASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIDFYKFDPWELP 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme297593g00001 52 Pfam No apical meristem (NAM) protein 7 52 IPR003441 GO:0003677|GO:0006355
Trme297593g00001 52 SUPERFAMILY NAC domain 3 52 IPR036093 GO:0003677|GO:0006355
Trme297593g00001 52 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 52 - -
Trme297593g00001 52 Gene3D NAC domain 15 52 IPR036093 GO:0003677|GO:0006355
Trme297593g00001 52 ProSiteProfiles NAC domain profile. 6 52 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme297593g00001 Trme-Chr297593 136 292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme297593g00001 1 52 NAC Transcription Factor Family AT4G17980 88.462 1.14e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme297593g00001 NAM 3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme297593g00001 - - gmx:100792714 112.464