Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29741g00001 ATGTCACTGGATTGGCTTAGGCGTTTCAATATTATTGGTAGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGAGTGAGGATTATTCACAGAGATCTAAAAACTAGCAATATATTACTAGACGTAAATTTGGAGCCGAAAATATCAGATTTTGGCTTGGCTCGAATCTTTTTGGGGGACCAAATCGAGGCAAACACAAATAGAGTGGCTGGAACTTATGGCTACATATCTCCAGAGTATGCTGTCCATGGGGATTTCTCAGTGAAATCAGATGTATTTAGTTATGGTGTGATTGTACTGGAGATTATAAGTGGGAAAAGGAATAGGGGATTTCCAAACCTCGAACAGTGCAATAATCTTCTTGGATACGCATGGAGATTATGGACGGAAGAGAGATCCCTGGAATTATTGGATGAAGTGTTACGGGAACAATATACAGCATTTGAAGTCATACGAAGTATACAGGTGGGCTTGTTATGTGTGCAACAAAGACCAGAAGATAGACCAGACATGTCATCTGTGGTTCTAATGCTAAATGGTCAGAAACTATTGCCAGAGCCAAAGGTTCCTGGCTTTTACACTGAAAAAGATTTACGTACCGAATCAGATTCTTCACTCGCAACTCGCAAATTCTGCTCAACTAACGAAATATCCATTACAGAGTTAGATGCAAGATAG 684 0.3991 MSLDWLRRFNIIGSIARGLLYLHQDSRVRIIHRDLKTSNILLDVNLEPKISDFGLARIFLGDQIEANTNRVAGTYGYISPEYAVHGDFSVKSDVFSYGVIVLEIISGKRNRGFPNLEQCNNLLGYAWRLWTEERSLELLDEVLREQYTAFEVIRSIQVGLLCVQQRPEDRPDMSSVVLMLNGQKLLPEPKVPGFYTEKDLRTESDSSLATRKFCSTNEISITELDAR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29741g00001 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 30 42 IPR008271 GO:0004672|GO:0006468
Trme29741g00001 227 Gene3D Transferase(Phosphotransferase) domain 1 1 188 - -
Trme29741g00001 227 SUPERFAMILY Protein kinase-like (PK-like) 2 195 IPR011009 -
Trme29741g00001 227 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 227 - -
Trme29741g00001 227 Pfam Protein kinase domain 10 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29741g00001 227 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 188 - -
Trme29741g00001 227 Pfam Domain of unknown function (DUF3403) 186 227 IPR021820 GO:0004674
Trme29741g00001 227 SMART serkin_6 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29741g00001 227 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29741g00001 Trme-Chr29741 270 1120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29741g00001 1 227 Receptor kinase-like Gene Family AT4G23140 52.301 8.33e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme29741g00001 Pkinase 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29741g00001 - - gmx:100776042 352.443