Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme296947g00001 GTTCAATCTTACACTTACTCCACTAAATACCCTGTAGCTGAAATATTGAAGAGTGATGTCGTCCAAGACACCACTGCTCCTAAAATTGCATCTTTCTCTTCTCGTGGTCCAAATTCTATTGTACCAGAAATTATGAAACCAGATATAAGTGCTCCTGGAGTTGATATCTTGGCTGCATATTCACCTAACGGACCAATCCCTGATGAGTTGATTTTTCACGGAAATGAGAAATACATTATATTATCTGGTACCTCTATGGCATGTCCTCATGCTGCTGGAGTTGTCGCATATGTCAAATCATTTCATCCAGATTGGTCACCTTCAGCTATCAAATCCGCCATCATGAC 347 0.4035 VQSYTYSTKYPVAEILKSDVVQDTTAPKIASFSSRGPNSIVPEIMKPDISAPGVDILAAYSPNGPIPDELIFHGNEKYIILSGTSMACPHAAGVVAYVKSFHPDWSPSAIKSAIMT 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme296947g00001 116 ProSiteProfiles Serine proteases, subtilase domain profile. 1 116 - -
Trme296947g00001 116 Gene3D - 2 22 - -
Trme296947g00001 116 Pfam Subtilase family 24 116 IPR000209 GO:0006508|GO:0008236
Trme296947g00001 116 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 116 IPR045051 -
Trme296947g00001 116 SUPERFAMILY Subtilisin-like 25 116 IPR036852 GO:0004252|GO:0006508
Trme296947g00001 116 ProSitePatterns Serine proteases, subtilase family, serine active site. 83 93 IPR023828 -
Trme296947g00001 116 Gene3D Peptidase S8/S53 domain 23 116 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme296947g00001 Trme-Chr296947 2 348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme296947g00001 3 116 Subtilisin-like Serine Gene Family AT5G59100 64.348 2.33e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme296947g00001 - - qsa:O6P43_020998 165.622