Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29661g00001 ATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTAAAGTATTGGGGTCCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGGGTTGCTGGTAACAAAGATCTATATCTTGGAACCTTCA 280 0.3893 MEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTF 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29661g00001 93 ProSiteProfiles AP2/ERF domain profile. 62 93 IPR001471 GO:0003700|GO:0006355
Trme29661g00001 93 ProSiteProfiles AP2/ERF domain profile. 1 26 IPR001471 GO:0003700|GO:0006355
Trme29661g00001 93 Gene3D AP2/ERF domain 62 93 IPR036955 GO:0003700|GO:0006355
Trme29661g00001 93 Gene3D AP2/ERF domain 1 28 IPR036955 GO:0003700|GO:0006355
Trme29661g00001 93 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 93 - -
Trme29661g00001 93 SUPERFAMILY DNA-binding domain 61 93 IPR016177 GO:0003677
Trme29661g00001 93 SUPERFAMILY DNA-binding domain 2 28 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29661g00001 Trme-Chr29661 154 715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29661g00001 1 93 AP2-EREBP Transcription Factor Family AT4G37750 90.323 3.47e-57 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29661g00001 K09285 - pop:112324045 192.971