Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29649g00001 GAAGTTGATGTTGAAGAGGAAGAAGCTGAAGCTGGTAATGAACTTAAAGATGGCGATTTGTTGCAATTTGACTTTGCAACCATTGAATTAGCTACAAGCAACTTCTCAGATACAAATAAGCTTGGTCAAGGTGGCTTTGGATCTGTTTATAAGGGTACACTTTCTGATGGACATGATATTGCTATCAAAAGGTTGGCTAAGAATTCTGAGCAAGGAGAAACAGAATTTAAGAATGAAGTGTTGCTCACAGGAAAGCTTCAACATCGAAATTTAGTTAAGCTACTAGATCCAATCAAGTGTGCAAATTTGAATTGGGAAAGACGCTACAAAATTATAAAAGATATTGCACGTGGTCTTGTTTATCTTCATGAAGATTCTCGGTTACAAATTGTTCACCGTGATCTCAAAACAAGTAACATTCTACTAGATGATGAGATGAACCCAAAAATTACAGATTTTGGAATTGCAAAGTTGTTTGATGCCAATCAAACTTATGGCATGACAAAGAACGTTGTTGGAACTGTGTAA 528 0.3598 EVDVEEEEAEAGNELKDGDLLQFDFATIELATSNFSDTNKLGQGGFGSVYKGTLSDGHDIAIKRLAKNSEQGETEFKNEVLLTGKLQHRNLVKLLDPIKCANLNWERRYKIIKDIARGLVYLHEDSRLQIVHRDLKTSNILLDDEMNPKITDFGIAKLFDANQTYGMTKNVVGTV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29649g00001 175 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Trme29649g00001 175 SMART serkin_6 35 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29649g00001 175 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 175 - -
Trme29649g00001 175 ProSitePatterns Protein kinases ATP-binding region signature. 41 63 IPR017441 GO:0005524
Trme29649g00001 175 SUPERFAMILY Protein kinase-like (PK-like) 20 174 IPR011009 -
Trme29649g00001 175 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Trme29649g00001 175 FunFam Putative LRR receptor-like serine/threonine-protein kinase 2 102 - -
Trme29649g00001 175 ProSiteProfiles Protein kinase domain profile. 35 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29649g00001 175 Pfam Protein kinase domain 36 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29649g00001 175 Pfam Protein kinase domain 108 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29649g00001 175 FunFam Os07g0541700 protein 86 174 - -
Trme29649g00001 175 Gene3D Transferase(Phosphotransferase) domain 1 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29649g00001 Trme-Chr29649 348 1176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29649g00001 3 174 Receptor kinase-like Gene Family AT4G38830 54.271 1.60e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme29649g00001 Pkinase 4.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29649g00001 - - tpra:123882259 288.115