Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29639g00001 ATGAACCAACATCAAGCTCATCCATGTCAAGGGTCGTCGGTGCATTCGTCAATCCATGATGGTTTTCCTCTTACAATGGGGACGTTGCCGAACTGTGATCAGACAATGTCGATTAATGAGTTTGGTCAGGGAGATAGAAACAAACACTCGGGGAGTGAGGAAGACGAGCCGGAGGAAGGTGGTGATGGTCATCATCAAGAAGGTGGTAGAGGGAAAAAAGGGACGCCTTGGCAGCGTGTGAAATGGACTGATAAGATGGTGAGGCTTTTGATAACGGCGGTGTCTTATATTGGCGAGGATGGTAGTTCTGAAGGTGGGGGTGGTGGAAGGAAGAAATTTGCGGTGTTGCAGAAAAAGGGTAAGTGGAAATCTATTTCTAAGGTTATGGCTGAAAGAGGTTATCGTGTTTCGCCTCAGCAATGTGAGGATAAATTCAACGATCTTAATAAAAGGTATAAAAAGCTTAACGATATGCTTGGAAGGGGAACTTCTTGTCAGGTTGTTGAGAATCCGGCTTTGTTGGATGTAATAGATTTTCTTAACGAGAAAGAAAAGGATGATGTTAGAAAAATATTAAATTCAAAACATCTCTTCTATGAAGAGATGTGTTCTTACCATAATTGTAATAGATTGCATTTGCCGCACGATCCTGCATTGCAACGTTCCCTGCAGATAGCTCTCCGAAATAGAGATGACCATGATAACGATGATGTGAGAAGGTCCTATCATGATGATCATGACGAAGATGATCATGATATGGAAACCGACGATCATGATGAGTTCGAAGAGAATTTTGCTTCCCATGGAGATAGTCGAGGAATCTTTGGAGGATTGGGAGGAACTACGAAAAGACTAAGACAAGGCCAAGGACATGAAGATGCTACTACTTTTGGGAATTCTATAAATTGTCAGGAGTACCATAAAAGTTCACATCCTCATGGACCGACTGTCCAAACGGACGGAAATCAAGCTTTACCTGAAAACATGAGAGCAGCTTGGTTACAGAAGCAATGGTTGGATTCTCGCTCAGTTCAATTAGAAGAACAGAAGCTACAAATTCAGGTTGAGATGCTGGAATTAGAGAAACAAAGATTAAAGTGGGAGAGGTTTAGCAAGAAACAAGACCGGGAGTTGGAGAAGTTCAAGCTGGAGAACGAT 1158 0.424 MNQHQAHPCQGSSVHSSIHDGFPLTMGTLPNCDQTMSINEFGQGDRNKHSGSEEDEPEEGGDGHHQEGGRGKKGTPWQRVKWTDKMVRLLITAVSYIGEDGSSEGGGGGRKKFAVLQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDFLNEKEKDDVRKILNSKHLFYEEMCSYHNCNRLHLPHDPALQRSLQIALRNRDDHDNDDVRRSYHDDHDEDDHDMETDDHDEFEENFASHGDSRGIFGGLGGTTKRLRQGQGHEDATTFGNSINCQEYHKSSHPHGPTVQTDGNQALPENMRAAWLQKQWLDSRSVQLEEQKLQIQVEMLELEKQRLKWERFSKKQDRELEKFKLEND 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29639g00001 386 Pfam Myb/SANT-like DNA-binding domain 79 205 IPR044822 -
Trme29639g00001 386 Coils Coil 343 368 - -
Trme29639g00001 386 Coils Coil 371 386 - -
Trme29639g00001 386 MobiDBLite consensus disorder prediction 28 45 - -
Trme29639g00001 386 PANTHER F16F4.11 PROTEIN-RELATED 4 386 - -
Trme29639g00001 386 MobiDBLite consensus disorder prediction 233 248 - -
Trme29639g00001 386 Gene3D - 82 154 - -
Trme29639g00001 386 MobiDBLite consensus disorder prediction 46 78 - -
Trme29639g00001 386 MobiDBLite consensus disorder prediction 1 78 - -
Trme29639g00001 386 MobiDBLite consensus disorder prediction 1 19 - -
Trme29639g00001 386 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29639g00001 Trme-Chr29639 1 1158 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme29639g00001 Myb_DNA-bind_4 8.3e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29639g00001 - - gmx:100816474 589.341