Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme296243g00001 CCATTTTCTTACATAGCTGCACTTCTAACAGGTAGACCTAACTCAAAAGCTATTAATGGATCAAATGGTGAAACCCTAAATGCATCACAAGCTTTTAGTCTAGCTGATATTGGTAAAGAATTCTTCAATTTGCAACCGAAAGAAGGTCTTGCACTTGTTAACGGAACTGGTGTTGGAGCTGGTTTAGCTTCTATAGTTCTATTTGATGCTAATATCTTAACTGTTTTATCTGAAATTATGTCGGCAATCTTCGCTGAAGTTATGCAAGGGAAACCGGAGTTTACAGATCATTTGACACATAAGTTGAAGCATCATCCTGGTCAAATTGAAGCTGCGGCATTGATGGAA 348 0.3793 PFSYIAALLTGRPNSKAINGSNGETLNASQAFSLADIGKEFFNLQPKEGLALVNGTGVGAGLASIVLFDANILTVLSEIMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAALME 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme296243g00001 116 SUPERFAMILY L-aspartase-like 1 115 IPR008948 GO:0003824
Trme296243g00001 116 Gene3D Fumarase/aspartase (Central domain) 57 116 - -
Trme296243g00001 116 Pfam Aromatic amino acid lyase 1 115 IPR001106 -
Trme296243g00001 116 Gene3D - 1 56 IPR024083 -
Trme296243g00001 116 PANTHER HISTIDINE AMMONIA-LYASE 1 116 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme296243g00001 Trme-Chr296243 1 348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme296243g00001 1 116 Monolignol Biosynthesis Gene Families AT3G10340 81.034 4.36e-58 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme296243g00001 K10775 - gmx:100302735 190.274