Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29611g00001 GGAGTTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGACGCTTGTCAAAGGAATAATATTCTCATCATCAACTACCCTATACGGGATGGGGATTCTTATGACATGAGAAAAAAACTCCCATTTTGTGTTGGGCTTTTATTACGGTTGCTAAGAAAGAATCTCCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATATCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGCAGGCCTGACAGCCTGACGAACTTCAATGTAGGATGA 363 0.4187 GVTAVLNFQSGTEAENWGINVKSINDACQRNNILIINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDSLTNFNVG 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29611g00001 120 Gene3D Protein tyrosine phosphatase superfamily 1 118 IPR029021 -
Trme29611g00001 120 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 22 113 - -
Trme29611g00001 120 Pfam Dual specificity phosphatase, catalytic domain 19 104 IPR000340 GO:0008138|GO:0016311
Trme29611g00001 120 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 116 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29611g00001 1 112 Protein tyrosine phosphatase (PTP) family AT3G01510 75.893 8.80e-59 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29611g00001 - - mtr:25498007 229.18