Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2959g00001 AATTTGAATATTTGCAACAATAAACTCTCCGGTGTTATTCCGGACGAGTTTGGAAAGTTGAGTTCATTGGTTGAGTTAATTGCTTACAGCAACTTTCTCGTTGGACCTTTGCCGAATTCGGTTGGAAATCTTAAGAATCTTGCGACTTTCAGAGCTGGGGCGAATAACATTACTGGTAGCTTGCCGAAGGAAATTGGCAGATGTAAGAGTTTGGTACGTCTTGGTCTTGCTCAAAATCAGATCGAAGGGGAGATACCGAGCGAGATTGGGATGCTTGAAAGATTAAAAGAATTGGTTTTATGGGAAAACCAGTTGTCAGGAGTTGTTCCTAAAGAGCTTGGGAATTGTAGCAGGCTTGAGATCCTTGCTCTATACGGGAATAATCTCATTGGACCGTTACCTCGTGAGATGGGGAACCTGAAATCGTTGAAGTGGTTGTATCTTTACAGAAATAAGTTGAATGGATCCATTCCAAGGGAAATTGGAAATCTTTCTAAAGCCTTACACATTGATTTCTCGGAGAACTCTTTAGTCGGAAATATCCCTTCAGAGTTCAGCAAAATTCGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCATTTAACCGGCGTTATACCGAATGAGTTTGGTAACTTGAAGAACCTGACGAAGCTGGACCTGTCGATAAATAACATTACTGGTCCGATTCCGCATGGCTTCCAATATTTGACTCATATGTCGCAGTTGCAACTTTTTGACAACTCCTTAAGCGGCATTATTCCTCAGGGACTTGGACTTCATAGTCGTCTTTGGGTGGTTGATTTTTCTGACAACAACTTGACAGGAAATATACCTCCTCATCTATGCCGAAACTCTCATTTGATGATGTTGAATGTAGCAAATAATCAGCTTTACGGAAAAATACCGTCAGGGATATTGAACTGTGAATCGTTGGCACAGTTGCTGTTGATCGGTAACAGGCTTACCGGTGGCTTCCCTTCGGAATTGTGTAAACTGGAGAATCTAACTGCCATTGATTTGAATGATAACAGGTTCAGCGGTCCACTTTCTCGTGAGATCGCAAACTGCCACAACTTGCAAAGGCTTCACATTGCAAACAATTACTTCAAATTGGAGTTGCCGAAAGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCTTTTCACCGGAAGAATCCCACCAGAAATTTTTTGGTGCCAAAGGCTGCAGCGGCTCGATCTCAGTCAGAATCGTTTTACCGGTTCTTTGCCAAATGAACTTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAAACAATAAATTGTCTGGAAATATTCCTGCAGCATTAGGCAATCTGTCTCATTTGAACTGGTTGCGGATGGATGGCAATTTGTTTTTCGGTGAAATACCTCCTGAGTTAGGTTCTCTTTCGAGCTTACAGATTGAAATGGATCTCAGTTACAATAATCTTTCCGGAAGAATACCATCTCGGCTTGGCAATCTCAATATGCTTGAAAATCTCTTTCTCAATAACAACCATTTGGAAGGTGAAATTCCAAGTACCTTTAGCGCACTTTCAAGCTTGATGGGGTGCAATTTCTCATACAATAACCTCTCCGGGCCTATCCCTTCCACTAAAATTTTCGAAAGTATGGCTGTAAGCAGCTTTGTTGGTGGTAACATAGGCCTTTGTGGTACACCTCTCATTGACTGCAATAGCATTTCAGCTTCTCGCTCGATTCCTCCTGTGAAAGACGTTGATTCTCCTCGTGCTAAAATTGTCATGATCATTGCAGCTACTGTCGGCGGTGTTTCTCTCATTTTGATTTTAGTTATTTTATATCTTATGAGACAACCTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANAAAGGACGGTTTCACGTTCCAAGACTTACTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTCATTGGTAGCGGAGCATGTGGAACGGTTTATAAGGCGGTTATGAAATCCGGTAAGACCATTGCTGTTAAGAAGTTAGCATCGAACCGGGAGGGGAACAACGTCGATAATAGTTTCAGGGCTGAAATATCGACTCTAGGAAGGATTAGGCATCGGAACATAGTGAAGCTGTATGGTTTTTGCTATCACCAAGGTTCAAATCTCTTACTTTATGAATACATGGAAAGAGGTAGCTTAGGTGAATTATTGCATGGTTCTGCAAGTAATTTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCTGAAGGTCTTGCTTACTTGCATCATGACTGTAAACCGAAGATTATTCACCGTGACATAAAATCTAACAACATTCTGCTTGATGAAAATTTTGAGGCCCATGTTGGTGATTTCGGCTTGGCAAAAGTGATTGACATGCCTCAGTCAAAATCGATGTCCGCAGTTGCCGGATCTTATGGTTATATTGCTCCTG 2485 0.4032 NLNICNNKLSGVIPDEFGKLSSLVELIAYSNFLVGPLPNSVGNLKNLATFRAGANNITGSLPKEIGRCKSLVRLGLAQNQIEGEIPSEIGMLERLKELVLWENQLSGVVPKELGNCSRLEILALYGNNLIGPLPREMGNLKSLKWLYLYRNKLNGSIPREIGNLSKALHIDFSENSLVGNIPSEFSKIRGLSLLFLFENHLTGVIPNEFGNLKNLTKLDLSINNITGPIPHGFQYLTHMSQLQLFDNSLSGIIPQGLGLHSRLWVVDFSDNNLTGNIPPHLCRNSHLMMLNVANNQLYGKIPSGILNCESLAQLLLIGNRLTGGFPSELCKLENLTAIDLNDNRFSGPLSREIANCHNLQRLHIANNYFKLELPKEIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNRFTGSLPNELGTLQHLEILKLSNNKLSGNIPAALGNLSHLNWLRMDGNLFFGEIPPELGSLSSLQIEMDLSYNNLSGRIPSRLGNLNMLENLFLNNNHLEGEIPSTFSALSSLMGCNFSYNNLSGPIPSTKIFESMAVSSFVGGNIGLCGTPLIDCNSISASRSIPPVKDVDSPRAKIVMIIAATVGGVSLILILVILYLMRQPXXXXXXXXXXXXXXXXXXXXXXXKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDNSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAP 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2959g00001 828 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 629 735 - -
Trme2959g00001 828 Gene3D Transferase(Phosphotransferase) domain 1 736 828 - -
Trme2959g00001 828 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 207 421 - -
Trme2959g00001 828 Coils Coil 643 644 - -
Trme2959g00001 828 SUPERFAMILY Protein kinase-like (PK-like) 643 828 IPR011009 -
Trme2959g00001 828 ProSiteProfiles Protein kinase domain profile. 658 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2959g00001 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Trme2959g00001 828 Gene3D Ribonuclease Inhibitor 260 575 IPR032675 -
Trme2959g00001 828 Gene3D Ribonuclease Inhibitor 1 259 IPR032675 -
Trme2959g00001 828 SMART serkin_6 658 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2959g00001 828 SUPERFAMILY RNI-like 229 540 - -
Trme2959g00001 828 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 260 575 - -
Trme2959g00001 828 SMART LRR_typ_2 501 524 IPR003591 -
Trme2959g00001 828 SMART LRR_typ_2 236 260 IPR003591 -
Trme2959g00001 828 SMART LRR_typ_2 92 115 IPR003591 -
Trme2959g00001 828 SMART LRR_typ_2 140 164 IPR003591 -
Trme2959g00001 828 SMART LRR_typ_2 428 452 IPR003591 -
Trme2959g00001 828 SMART LRR_typ_2 212 235 IPR003591 -
Trme2959g00001 828 SMART LRR_typ_2 380 404 IPR003591 -
Trme2959g00001 828 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Trme2959g00001 828 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Trme2959g00001 828 Pfam Leucine rich repeat 406 464 IPR001611 GO:0005515
Trme2959g00001 828 Gene3D Phosphorylase Kinase; domain 1 630 735 - -
Trme2959g00001 828 SMART LRR_sd22_2 212 238 - -
Trme2959g00001 828 SMART LRR_sd22_2 428 454 - -
Trme2959g00001 828 SMART LRR_sd22_2 140 166 - -
Trme2959g00001 828 SMART LRR_sd22_2 332 358 - -
Trme2959g00001 828 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 132 236 - -
Trme2959g00001 828 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 36 131 - -
Trme2959g00001 828 FunFam Protein kinase superfamily protein 736 807 - -
Trme2959g00001 828 Pfam Protein kinase domain 659 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2959g00001 828 SUPERFAMILY RNI-like 1 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2959g00001 Trme-Chr2959 1 2485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2959g00001 2 828 Receptor kinase-like Gene Family AT4G08850 36.735 7.83e-171 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme2959g00001 Pkinase 2.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2959g00001 - - gmx:100807838 1313.52