Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29590g00001 ATGGCAGAAACTGCAGTTTTGTTTGTTTTACAGCAATTCTACAAACTTGCTGTAGAAGAAACCTACAAAAATGCAGTAGCAAAAGAAACTTTGCTGAAAGGGGTACATGATGGCTTCAATTACATCAAACATGAACTTGAGAGCATCCAAGCATTCCTCAAGGATGCAGACACAAAGGCTGCTGCTGATGAAGGAGTCAAAACGTGGGTGAAGCAACTAAGAGAAATATCTTTTCACATAGAAGATGTGATTGATGAGTATGTCAAGTATTTGGCAAAAAAGGTCAAGAATTCTGGAAGCTTAGCCTCAATGAAAAAAGCAGCTCAAAAGCTCACCAAATCCGAGAACCAAAGACATGAAATTGCTTCTGAGATTCAAAAGATCAAGTCATCACTTATTGACATCAATAAAAGAAGAAAGAGGTATGAGTTTAAGGCTGAAAATGGATCAGGAAGCTCTAGAGGGGCTACTCAAAATGAAAATTTTGGCGACCCTCGAATGGCTTCTCGTTTCATTGAAGAGACTCAAGTTGTGGGGTTTGAAAAACCAAGAGAGGACTTGGTGAGTTTTTTGGTGGAGGAAACCAATGAGCTCAAGTTGGTTTCTTTGGTAGGCATGGGAGGACTCGGAAAAACTACTCTTGCAAAGATTGTTTTTGATAATGAGTCGGTGAAAAAGCACTTCAATTGTCGCGCTTTCATTACAGTTTCTCAAACCTACGATGTGAGGGAATTGTTGACAGAGATGATAAAGAAGTTTTGCACGGATAGCAATGAGCATAATCCGACGGATCTGCAAGGGATGGATAAAGAAACATTGATTACTCAAGTGACAAAATACCTCGAGTTGAAAAGGTACTTAGTTTTATTTGATGATGTTTGGACAGAAAAATTTGCTGATGAGATTAAGCATGCCTTAATTAGTAATAAAAATGGAAGTAGAATCATTGTGACCACTAGAAAAATGAATGTAGCAATATCTTTTAAGAAATCTTTTCATGATGTTGTTGTTCATGAGCTACAACCTTTGCCTCCAAACAAGGCACGGGAACTGTTTTGTAACAAGGTGTTTGGAGGGCAATGTCCAACAGAACTT 1095 0.3836 MAETAVLFVLQQFYKLAVEETYKNAVAKETLLKGVHDGFNYIKHELESIQAFLKDADTKAAADEGVKTWVKQLREISFHIEDVIDEYVKYLAKKVKNSGSLASMKKAAQKLTKSENQRHEIASEIQKIKSSLIDINKRRKRYEFKAENGSGSSRGATQNENFGDPRMASRFIEETQVVGFEKPREDLVSFLVEETNELKLVSLVGMGGLGKTTLAKIVFDNESVKKHFNCRAFITVSQTYDVRELLTEMIKKFCTDSNEHNPTDLQGMDKETLITQVTKYLELKRYLVLFDDVWTEKFADEIKHALISNKNGSRIIVTTRKMNVAISFKKSFHDVVVHELQPLPPNKARELFCNKVFGGQCPTEL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29590g00001 365 MobiDBLite consensus disorder prediction 144 163 - -
Trme29590g00001 365 Pfam NB-ARC domain 182 359 IPR002182 GO:0043531
Trme29590g00001 365 Gene3D - 164 336 IPR027417 -
Trme29590g00001 365 PANTHER TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG 29 255 - -
Trme29590g00001 365 FunFam Probable disease resistance protein At1g61300 161 331 - -
Trme29590g00001 365 Pfam Rx N-terminal domain 5 93 IPR041118 -
Trme29590g00001 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 364 IPR027417 -
Trme29590g00001 365 Gene3D - 4 122 - -
Trme29590g00001 365 Coils Coil 104 124 - -
Trme29590g00001 365 PRINTS Disease resistance protein signature 200 215 - -
Trme29590g00001 365 PRINTS Disease resistance protein signature 280 294 - -
Trme29590g00001 365 CDD RX-CC_like 2 135 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29590g00001 Trme-Chr29590 1 1095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29590g00001 173 343 WRKY Transcription Factor Family AT4G12020 26.316 6.20e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29590g00001 K13457 - vun:114181831 372.089