Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29560g00001 GGTGGCTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACCATAGTGTTTCTTAAGGCATATTTGAAACTGTTTCCAAAATGCTTGCCGATTGTTGTCGCTCCTGCTAGTTTACTGCTAACTTGGGAAGAGGAATTCAAGAAATGGGACATTGGAGTTCCATTTCACAATATAAGCAATATAGAGTTATCTGGTAAAGAGCATGCTGATGTGTTTAACAGATTCGATAGATTTAGTACACGGCATCGTACTGACGAAACACGAATGGCAAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACAATTTGTATGGAACAATTTGCCAACATAAGGAAAAGAGAAAGCATGAAAGTGTGAATGAGAGAAAAGGAGACTTTGATATGCGAAAAGTTCTACTTAAAGCTCCTGGCTTGTTGGTTCTGGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCAAAGANTCAAACGCAGAAGCGAATCATCCTTTCTGGAACTCCATTCCAGAATAATTTCTGGGAGCTTTACAGCACTTTGAGCTTAGTAAAGCCTTCATTTCCTAACATGATACCGCCTGAGCTAAAAAGTTTTTGTTATAAGCAGGGATATGGATCATCTAAAAAATGGGGTTGGGAAGCTGTTTCAGGCAAAATAGAAAGAAACCCTTCTGATGATGATAAGATCGAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTGAAAGTAAGCTTCCCGGGTTAAGGGAATGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAATGATATTCTGAAGAGTATTAAACGTTCTCAGAACAAAGTATTTAACTTTGAGCGTAAGATTGCATTGACATCCGTCCATCCATCTCTTTTCCTTGAATGTCATCTTTCGAAAAAAGAAGAATCTGTACTCGACAAGGATCAGCTAAAACAGATTAGACTGAACCCACATGAAGCCAATTCCACGCTCCTTTAG 1038 0.3931 GGCIISHAPGTGKTRLTIVFLKAYLKLFPKCLPIVVAPASLLLTWEEEFKKWDIGVPFHNISNIELSGKEHADVFNRFDRFSTRHRTDETRMAKLISWFKETSILGISYNLYGTICQHKEKRKHESVNERKGDFDMRKVLLKAPGLLVLDEGHTPRNQRSHIWKVLSKXQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPNMIPPELKSFCYKQGYGSSKKWGWEAVSGKIERNPSDDDKIEKLKLLMDPFVHVHKGAILESKLPGLRECLVTLKADSLQNDILKSIKRSQNKVFNFERKIALTSVHPSLFLECHLSKKEESVLDKDQLKQIRLNPHEANSTLL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29560g00001 345 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 199 IPR014001 -
Trme29560g00001 345 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 339 IPR044567 GO:0080188
Trme29560g00001 345 Pfam SNF2-related domain 2 289 IPR000330 GO:0005524|GO:0140658
Trme29560g00001 345 Gene3D - 1 214 IPR038718 -
Trme29560g00001 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 206 IPR027417 -
Trme29560g00001 345 SMART ultradead3 1 211 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29560g00001 Trme-Chr29560 2 1112 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme29560g00001 SNF2_N 1.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29560g00001 K10875 - gmx:100812737 389.808