Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2950g00001 TCATCTGTGGATGTGGATTTCTTTACTGAATATGGTGAAGGGAGCAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGTTATGGTGTTGTTTGTTCTGCATATGATACACACACCGGAGAAAAAGTTGCTATAAANAAAATCAATGACATATTTGAACATGTATCAGATGCCACTCGCATTCTTCGTGAGATTAAGCTTCTTAGACTATTACGCCATCCGGATATTGTGGAAATCAAGCATATTTTGTTACCTCCTTCAAGAAGGGAATTTAAAGATATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATCTGACACCAGAACATTACCAGTTTTTCCTCTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCAAAAAACATTTTGGCGAATGCCGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCTAGAGTAGCTTTTAATGATACACCAACTGCAATATTCTGGACAGATTATGTCGCAACAAGGTGGTATAGAGCTCCCGAGTTGTGTGGATCCTTTTTCTCCAAGTATACACCAGCTATAGACATATGGAGCATTGGATGCATTTTCGCAGAACTATTAACTGGAAAACCTCTTTTCCCTGGGAAGAATGTTGTCCACCAACTGGATATCATGACTGATTTTCTTGGAACACCATCTCCCGACGCGATTGCAAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAGGCCAGTTCCTTTCTCGCAGAAATTTCCTAATACAGACCCCCTTGCTCTTCGGCTGTTAGAAAGAATGTTGGCGTTTGAGGCTAAGGATCGGCCTACGGCTGAAGAGGTTGAATCTTGA 915 0.4044 SSVDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIXKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPDAIARVRNEKARRYLSSMRKKRPVPFSQKFPNTDPLALRLLERMLAFEAKDRPTAEEVES 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2950g00001 304 ProSiteProfiles Protein kinase domain profile. 17 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2950g00001 304 SMART serkin_6 17 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2950g00001 304 Pfam Protein kinase domain 17 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2950g00001 304 FunFam Mitogen-activated protein kinase 103 304 - -
Trme2950g00001 304 CDD STKc_TDY_MAPK 16 301 - -
Trme2950g00001 304 ProSitePatterns MAP kinase signature. 52 155 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trme2950g00001 304 FunFam Mitogen-activated protein kinase 7 111 - -
Trme2950g00001 304 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 302 - -
Trme2950g00001 304 SUPERFAMILY Protein kinase-like (PK-like) 14 302 IPR011009 -
Trme2950g00001 304 Gene3D Phosphorylase Kinase; domain 1 15 100 - -
Trme2950g00001 304 Gene3D Transferase(Phosphotransferase) domain 1 101 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2950g00001 Trme-Chr2950 489 2342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2950g00001 1 302 MAP Kinase Gene Family AT5G19010 94.371 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme2950g00001 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2950g00001 - - lja:Lj6g3v1887730.1 595.119