Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29470g00001 ATGAGCCTTGGTTTTAAAACTAGCAAAAGGGTGCTCTTTGTGAGGAATCTCGTTAGAGAGGTTGCTGGTTTTGCACCATATGAAAAGCGTATCACTGAGTTGCTCAAGGTTGGAAAAGATAAGAGGGCTTTGAAGGTTGCAAAGAGAAAGCTTGGAACACACAAGCGTGCCAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCAGGAAGATGAGGGCTGGTGGTGCAGGAGACAAAAAGAAATAG 246 0.4431 MSLGFKTSKRVLFVRNLVREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29470g00001 81 MobiDBLite consensus disorder prediction 58 81 - -
Trme29470g00001 81 PANTHER 60S RIBOSOMAL PROTEIN L36 6 79 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trme29470g00001 81 Pfam Ribosomal protein L36e 6 72 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trme29470g00001 81 MobiDBLite consensus disorder prediction 50 81 - -
Trme29470g00001 81 ProSitePatterns Ribosomal protein L36e signature. 26 36 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trme29470g00001 81 Gene3D 60S ribosomal protein L36 8 79 IPR038097 -
Trme29470g00001 81 FunFam 60S ribosomal protein L36 3 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29470g00001 Trme-Chr29470 553 1138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29470g00001 6 81 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 84.211 1.76e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29470g00001 K02920 - gmx:100785591 145.976