Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2945g00001 ACAAGTGTTCGTAGGGATCAGCGCATTCTCCAAAATGGTGTTCACACTGTTGTTGGTACTCCGGGGCGTGTGTATGATATGCTGCGGAGGGGGGCTCTTCGCCCGGATGGCATAAAGATGTTTGTTTTGGATGAGCTTGATGAAATGCTTTCAAATGGTTTCAAGGATAAGATCCATGAAATCTTCAAGCTACTGCCCAGCGAAATTCAGGTTGGAGTAATCTCTGCTGCAATGCCACCTGAAGCCCTTGAGGTTACTATGAAGTTAATGAAAAAGCCAGTGATAATTCAGGAAAAGCGTGATGAGCCAATGAGAGTTCAGGAAAAGCGTGGTGAGCCAGCGAGTGTTCAGGAAAAGTGTGATGAGCCAGTGAGAGTTCAGGAAAAGCGTTGTGAGCCGGTGAGTGTTCAGGAAAAGCGTGGTAAGCCGGTGATAGTTCAGGAAGAGCGTGATGAGCTGACCCTTGAGGGTATCAAGCAGTTTTATGTCAACGTTGAAAAGGAAGAGTGGAAGCTAGAGACATTAAGCGACTTCTACGAGACTCTATCAACCACTCGGTGTATAGTTTTTGTCAATACCGGGCGAAAAGTGGACTGGCTAACTGACAAGATGCGAAGCAAAAATCATACAGTGTCGGCCATCCATGGTGACATGGACCAGACCACTAGGGATATCATCATGCGCGAGTTCCAGTCTAGCTCTCCTCAAGTTCTCATTACCACCGACCCCTTGGTCCCTGGTATCGATGTGCATGAAGCGTCTCTAGTCATAAACTATGATCTCCCAACTCCACCTGAAAACTATCTCCACCGTATGGGTCGTGGTGGACGATTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATGCTAGAATGCTTGCTGATATTCAGAAATTCTACAATGCGAGTATGGAAGAGGTGCCATCGAATGTTGCTGATCTACTCTCATGA 960 0.4635 TSVRRDQRILQNGVHTVVGTPGRVYDMLRRGALRPDGIKMFVLDELDEMLSNGFKDKIHEIFKLLPSEIQVGVISAAMPPEALEVTMKLMKKPVIIQEKRDEPMRVQEKRGEPASVQEKCDEPVRVQEKRCEPVSVQEKRGKPVIVQEERDELTLEGIKQFYVNVEKEEWKLETLSDFYETLSTTRCIVFVNTGRKVDWLTDKMRSKNHTVSAIHGDMDQTTRDIIMREFQSSSPQVLITTDPLVPGIDVHEASLVINYDLPTPPENYLHRMGRGGRFGRKGVAINFVTLDDARMLADIQKFYNASMEEVPSNVADLLS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2945g00001 319 CDD SF2_C_DEAD 158 270 - -
Trme2945g00001 319 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 313 - -
Trme2945g00001 319 Gene3D - 150 318 IPR027417 -
Trme2945g00001 319 MobiDBLite consensus disorder prediction 101 121 - -
Trme2945g00001 319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 96 IPR014001 -
Trme2945g00001 319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 157 318 IPR001650 -
Trme2945g00001 319 FunFam Eukaryotic initiation factor 4A-III 152 318 - -
Trme2945g00001 319 Gene3D - 1 104 IPR027417 -
Trme2945g00001 319 Pfam DEAD/DEAH box helicase 4 81 IPR011545 GO:0003676|GO:0005524
Trme2945g00001 319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 299 IPR027417 -
Trme2945g00001 319 SMART helicmild6 198 279 IPR001650 -
Trme2945g00001 319 Pfam Helicase conserved C-terminal domain 171 279 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2945g00001 Trme-Chr2945 119 1262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2945g00001 1 318 Eukaryotic Initiation Factors Gene Family AT1G72730 63.836 3.70e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2945g00001 K03257 - gmx:100777628 392.504