Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29447g00001 ATGGGTAGAAAAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAGACTAATGGTGTTCTGTTTCCCGAGGAGAAACTTTGTAGATGGCTCGTTCAACTTCTAATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGG 337 0.4243 MGRKGYCEGGDMAEAIKKTNGVLFPEEKLCRWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29447g00001 112 Gene3D Transferase(Phosphotransferase) domain 1 5 112 - -
Trme29447g00001 112 Pfam Protein kinase domain 6 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29447g00001 112 SMART serkin_6 3 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29447g00001 112 SUPERFAMILY Protein kinase-like (PK-like) 6 112 IPR011009 -
Trme29447g00001 112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Trme29447g00001 112 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 112 - -
Trme29447g00001 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29447g00001 Trme-Chr29447 22 1062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29447g00001 6 112 MAP Kinase Kinase Kinase AT3G13530 40.741 2.48e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trme29447g00001 Pkinase 4.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29447g00001 K08857 - tpra:123923144 226.483