Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29433g00001 ATGGGTCGTAGAAGAATATCTATGGAACTCGTTCAAAAGGAGAAATCAAGACAGAAAACATTTTTAACCAGAAAGAATGGTTTAATGAAAAAAGTGAATGAATTGTCTACTCTTTGTGATGTTGATGTTTGTGTGATTCTCTATGCTCCCAAATTTGAAGGGCAGGAATTTGTTGAACCTGAAACATGGCCCAAAGACACAAAAGAGGTACAAAGAGTTCTTCAAAAATACTACAATACAACAATTGATAGGCGTCTTAAGATCTATGATATTCAAGAATATTTCAAGGAAAAGATGAAAAAAGTTGAATCCGAGATTTTCAATGTGCACAAAAAGATGCTAAAGGTCATGTATCCAACGTGGAATGAATCTTTCAACTCTTTTGGAGAGGAACAATTGAGGTTATTTGCTAGCATGTTGGATTCAAAGCTTGATGCTTGCAATCAAAAGATGAATATGCTAAGAGGAGATCATAATGGAAAAGCATTAAATGAATCACACAAGGTTGATAAACCTAATAGTAATACTCCTTATTTAACCTCAAATCCAAGTAGCTACTTCAATCTCATGCAAAACAACTTCTCCATTATTAGTGATAAAAATCCCTTAGAATTTTGGCCACTTGAATTGGGGCAGAGCTCTCAACCTTCTTCGATGTTTTCCGGTGCACAAGCTTCCTATCAGATGGAGTCTTATCCTTACAAGCATGTTGATGCTAATTGGGCTGATCAAGTTGATACTAATGTTACCTATGATCCTAAAATCAATACAAAAATGAAGGATGGAGCCCAAAACGATGAAAACTTATCATCATACTATTACAATGGAAATACACCAGCAATGCAATCATATGATATTGCTATGCAAACTCTTCCTTTTCAAAATCTTCCAAACCTACCACATGGATTTCAACTTAATGGATTTTATGATATAGATGGAAGGGAGTAG 948 0.3481 MGRRRISMELVQKEKSRQKTFLTRKNGLMKKVNELSTLCDVDVCVILYAPKFEGQEFVEPETWPKDTKEVQRVLQKYYNTTIDRRLKIYDIQEYFKEKMKKVESEIFNVHKKMLKVMYPTWNESFNSFGEEQLRLFASMLDSKLDACNQKMNMLRGDHNGKALNESHKVDKPNSNTPYLTSNPSSYFNLMQNNFSIISDKNPLEFWPLELGQSSQPSSMFSGAQASYQMESYPYKHVDANWADQVDTNVTYDPKINTKMKDGAQNDENLSSYYYNGNTPAMQSYDIAMQTLPFQNLPNLPHGFQLNGFYDIDGRE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29433g00001 315 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trme29433g00001 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 51 IPR002100 GO:0003677|GO:0046983
Trme29433g00001 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Trme29433g00001 315 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme29433g00001 315 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Trme29433g00001 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme29433g00001 315 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme29433g00001 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme29433g00001 315 SUPERFAMILY SRF-like 2 100 IPR036879 GO:0003677|GO:0046983
Trme29433g00001 315 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29433g00001 Trme-Chr29433 209 1156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29433g00001 1 126 Type I MADS-box Gene Family AT5G55690 40.945 3.77e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme29433g00001 SRF-TF 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29433g00001 - - tpra:123913303 419.468