Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2939g00001 ATGCATAATTATTACCCCATGGCTTTCCCTATCCTTTTCCTTCTCTTCATTTCCCTTCCATTTTCTTCAGCCAAACTCAACATTAACTACTACAAAACAACATGTCCTGACTTTGAAAAAATTGTTAGAGAAAACATTTACACAAAACAAAGCACAAGTCCGGCAACTGCGCCAGGCATCCTCCGTCTTTTTTTCCACGATTGTATCACCGACGGTTGTGATGCTTCCCTCCTCATTACTTCAACCGCATACAACCCTCACGCCGAGCGTGACGCTGATCTTAACCTATCCTTATCCGGCGATGCATTTGATATCATTGTCAATATAAAAAATGCATTAGAACTTGCATGTCCCGGCATTGTTTCGTGTTCTGATATTATTGCTCAAGCAACTAGAGATCTTGTTAAGATGGTTGGTGGTCCATTTTATCCAGTGAGGTTAGGAAGAAAAGATAGTCTTGTATCAGATGCTTCAAGAACTATAAAAGCTCTTCCAACAACAAAAATGACATTAGATGGTATAATTGAAAAATTTACCATAAAAAATTTCACTATTAGAGAAATGGTTGCATTAACTGGTGCACATACAATTGGTTTCACACATTGTAAAGAATTCAGCAATAGGATTTTCAACTTTAGCAAAACTTCTGAGATTGATCCAACACTTCATCCAAAATTGGCTCAAGGTTTGAGAGAAGTGTGTAAGAATTATACTCATGATCCTACAATGGCTGCATTTAATGATGTGAGGTCACCAGGGAAATTTGATAATGCATATTTTCAAAATGTGTTGAAGGGTTTRGGATTATTAACAACTGATTATATTTTGGGAGTTGATCCAAGGACAAAGCCAATTGTGGAATTGTATGCAAAAGATGAACAAGCATTTTTTGAAGATTTTGCTAAGGCAATGGAGAAGCTTTCTGTGTTTCAAGTGAAGACTGGTAAGAAAGGTGAAGTGAGGAGCAGGTGTGATCAATTCAATCATATTCCTAATTAG 999 0.3694 MHNYYPMAFPILFLLFISLPFSSAKLNINYYKTTCPDFEKIVRENIYTKQSTSPATAPGILRLFFHDCITDGCDASLLITSTAYNPHAERDADLNLSLSGDAFDIIVNIKNALELACPGIVSCSDIIAQATRDLVKMVGGPFYPVRLGRKDSLVSDASRTIKALPTTKMTLDGIIEKFTIKNFTIREMVALTGAHTIGFTHCKEFSNRIFNFSKTSEIDPTLHPKLAQGLREVCKNYTHDPTMAAFNDVRSPGKFDNAYFQNVLKGLGLLTTDYILGVDPRTKPIVELYAKDEQAFFEDFAKAMEKLSVFQVKTGKKGEVRSRCDQFNHIPN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2939g00001 332 FunFam Peroxidase 165 307 - -
Trme2939g00001 332 ProSiteProfiles Plant heme peroxidase family profile. 25 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 CDD secretory_peroxidase 25 327 IPR033905 GO:0004601|GO:0042744
Trme2939g00001 332 SUPERFAMILY Heme-dependent peroxidases 26 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Trme2939g00001 332 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Trme2939g00001 332 FunFam Peroxidase 29 177 - -
Trme2939g00001 332 Pfam Peroxidase 49 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 Gene3D Peroxidase, domain 2 165 307 - -
Trme2939g00001 332 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme2939g00001 332 Gene3D - 29 328 - -
Trme2939g00001 332 PANTHER - 9 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2939g00001 Trme-Chr2939 463 1461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2939g00001 9 330 Peroxidase AT5G47000 57.231 4.10e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2939g00001 K00430 - gmx:100795676 548.51