Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29395g00001 ATGTCTTGGGTGCTATCTGAAGTGAAACCAGAAGAGAAGAACAAGTTCATAAAGGAACTTCAGAAAGATAAGAAAGTTGTAGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCTCTGGCTTCTTCACATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCCAGTGAAGTGTCTTCCATTGTATTGATGCACAACCATCTCTCACAGCTGCTTGATGCTTTGGAGCTTAGCCGGCTAACCATGAATACTGTAAAGCAAAATCTTTGGTGGGCTTTCATATACAATATT 294 0.4184 MSWVLSEVKPEEKNKFIKELQKDKKVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMHNHLSQLLDALELSRLTMNTVKQNLWWAFIYNI 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29395g00001 98 PANTHER ATP7, ISOFORM B 4 98 - -
Trme29395g00001 98 NCBIfam HAD-IC family P-type ATPase 5 98 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme29395g00001 98 SUPERFAMILY HAD-like 8 98 IPR036412 -
Trme29395g00001 98 Gene3D - 1 97 IPR023214 -
Trme29395g00001 98 PRINTS H+-transporting ATPase (proton pump) signature 30 46 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme29395g00001 98 PRINTS H+-transporting ATPase (proton pump) signature 61 86 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme29395g00001 98 PRINTS H+-transporting ATPase (proton pump) signature 2 18 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme29395g00001 98 PRINTS P-type cation-transporting ATPase superfamily signature 30 49 - -
Trme29395g00001 98 PRINTS P-type cation-transporting ATPase superfamily signature 53 65 - -
Trme29395g00001 98 Pfam haloacid dehalogenase-like hydrolase 6 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29395g00001 Trme-Chr29395 237 960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29395g00001 4 98 Primary Pumps ATPases AT1G63440 46.316 1.17e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29395g00001 K17686 - gmx:100796210 152.525