Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29347g00001 ATGCCAGGGATTGGTAAAACAACCATTGCGAATGCCATTTATGCTCAGATTGCTCCCTATTTTGAGAACATGTACTTTCTCAATGATATCAAGAATAGTAGTCTATTTTCTTTACAACAGAGACTTATTTTTAACATCGGCAAAGCAACTGAAAGAAATATATCTACAACTGAATTAAAAGAGATATTTCGAGGTAAAAGGGTACTTATTGTACTTGACAATGTTAGTAAATTGGAGCAGCTAAATGCTTTGTGTGCAAGTCGTGAATGGTTTGGGGAAGGTAGCAAAATAATCATCACAGCAAGAGATAGACATCTACTTAAGGAGCATGGAGTTGGCCATATATATAAAGTGAAAGAACTGGACGAAAGTGAATCTCTAGTGCTTTTTAATTCAAAAGCATTCCGGCAAGCAACTTCTCAAGAAGATTTTGCTGAACTTTCCAGACAGGCAGTTGCTTATTCTCGGGGATTGCCTCTTGCTCTTAAAGTCATTGGGTCCTTATTGCGTGAGAGAACAATATCTGACTCAGAGTTTGCATTGCATAGGATCAAAATGTTTCCTCAACATGAAGTACAAAGTGTTCTAGAAGATAGTTTTAATGATTTGAATGATGAAGAGAAACAAATATTCCTTGATATTGCATATTTCTTTATCGGGATGAACCAAAATGATGTACTCCAAAGATACAATAGGTCAACACAACGCACAACTCTTCAAATATGTCGCCTTGAAGACAAGAGCTTTATAACCATTGATGAGAATAACAAGCTTCAAATGCATGACTTGCTACAAGCCACAGCAGAAGATATCATTAGGAGGAAATCAAGAATTAAAACTGATCAG 846 0.3617 MPGIGKTTIANAIYAQIAPYFENMYFLNDIKNSSLFSLQQRLIFNIGKATERNISTTELKEIFRGKRVLIVLDNVSKLEQLNALCASREWFGEGSKIIITARDRHLLKEHGVGHIYKVKELDESESLVLFNSKAFRQATSQEDFAELSRQAVAYSRGLPLALKVIGSLLRERTISDSEFALHRIKMFPQHEVQSVLEDSFNDLNDEEKQIFLDIAYFFIGMNQNDVLQRYNRSTQRTTLQICRLEDKSFITIDENNKLQMHDLLQATAEDIIRRKSRIKTDQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29347g00001 282 PRINTS Disease resistance protein signature 155 169 - -
Trme29347g00001 282 PRINTS Disease resistance protein signature 62 76 - -
Trme29347g00001 282 Gene3D - 1 112 IPR027417 -
Trme29347g00001 282 Gene3D - 120 204 IPR042197 -
Trme29347g00001 282 Pfam NB-ARC domain 1 198 IPR002182 GO:0043531
Trme29347g00001 282 SUPERFAMILY "Winged helix" DNA-binding domain 191 278 IPR036390 -
Trme29347g00001 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 214 IPR027417 -
Trme29347g00001 282 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 275 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29347g00001 Trme-Chr29347 304 1149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29347g00001 1 277 WRKY Transcription Factor Family AT5G45050 34.507 3.20e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29347g00001 - - mtr:11411578 305.449