Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme293013g00001 CCGATCTCTATGAAGCACGTGGGAAATAATCCTTCAAAACCCACGAAGCTATACAGAGGGGTGAGGCAAAGGCACTGGGGAAAATGGGTTGCTGAGATAAGACTACCAAAGAATCGTACTAGGCTTTGGCTTGGTACTTTTGATACAGCTGAAGAAGCTGCTTTGGCTTATGATAAAGCTGCTTATAAGCTTCGTGGTGACTTTGCTAGGCTTAATTTCCCAAATCTTAAACACCAAGGTTCTTCTATTGGTTGTGAGTTTGGTGAGTTTAAGCCTCTTCCTTCTTCTGTTGATGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAGGGGAAGA 349 0.4269 PISMKHVGNNPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSSIGCEFGEFKPLPSSVDAKLQAICEGLAEMQKQGK 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme293013g00001 116 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Trme293013g00001 116 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Trme293013g00001 116 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677
Trme293013g00001 116 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Trme293013g00001 116 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Trme293013g00001 116 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Trme293013g00001 116 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Trme293013g00001 116 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 2 114 - -
Trme293013g00001 116 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Trme293013g00001 116 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme293013g00001 Trme-Chr293013 1 349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme293013g00001 11 116 AP2-EREBP Transcription Factor Family AT1G78080 86.792 5.91e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme293013g00001 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme293013g00001 K09286 - gmx:732559 207.223