Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29261g00001 TTTGCTACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGCGAAACAGTTGTTGAAGTGCCCAATTGCAGCTGGGATGATATTGGCGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAAAAGTTTGAGAAGTTTGGAATGTCGCCTTCAAAGGGAGTTCTTTTCTATGGTCCTCCTGGCTGTGGTAAAACACTTTTGGCAAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTATCAAAGGTCCTGAGTTACTCACTATGTGGTTTGGAGAAAGTGAGGCAAATGTCAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTGTCCTGTTCTTTGATGAACTTGACTCCATTGCAACTCAGCGAGGTAGTAGTGTAGGAGATGCTGGGGGTGCTGCTGACAGGGTTTTGAACCAGCTGCTAACAGAAATGGATGGGATGTCGGCAAAGAAAACAGTTTTCATCATTGGCGCCACTAATCGACCAGACATTATAGACCCAGCTCTTCTGCGTCCAGGCCGTCTAGACCAGTTGATTTATATCCCCCTCCCAGATGAAGATTCCCGTCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAAGATGTCGATATTAGAGCTCTTGCAAAGTACACCCAAGGATTTAGCGGTGCTGATATTACCGAGATTTGCCAGCGTGCATGCAAATATGCCATAAGAGAGAACATTGAGAAGGTACAGTTCCGGGCTCCCTTTTAA 786 0.4529 FATALGSSNPSALRETVVEVPNCSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKVQFRAPF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29261g00001 261 Gene3D - 197 256 - -
Trme29261g00001 261 FunFam Transitional endoplasmic reticulum ATPase 13 196 - -
Trme29261g00001 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 255 IPR027417 -
Trme29261g00001 261 PANTHER AAA-FAMILY ATPASE 1 252 - -
Trme29261g00001 261 Pfam ATPase family associated with various cellular activities (AAA) 63 196 IPR003959 GO:0005524|GO:0016887
Trme29261g00001 261 Gene3D - 20 196 IPR027417 -
Trme29261g00001 261 CDD RecA-like_CDC48_r2-like 34 194 - -
Trme29261g00001 261 ProSitePatterns AAA-protein family signature. 166 184 IPR003960 GO:0005524|GO:0016887
Trme29261g00001 261 Pfam AAA+ lid domain 218 255 IPR041569 -
Trme29261g00001 261 SMART AAA_5 59 198 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29261g00001 Trme-Chr29261 2 1160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29261g00001 55 254 Calmodulin-binding Proteins AT3G56690 41.379 1.36e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29261g00001 K13525 - pvy:116144978 501.901