Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29199g00001 TGGATTCTAATCAATGTATATCAGGCCCTTCTCTCCGGATGCTCCGCGGGTGGTCTAGCATCTATAATACATTGCGATGAGTTCCAGAGCTTGTTACCAAAACCTTCCAAAGTGAAGTGTTTAAGTGATGCAGGATTTTTTCTCGATGCAATTGATGTATCTGGAGGACGGTCACTGAGGGATCTTTTTGGAGGCGTTGTTCAGTTACAGACTTTACTTACCTCCCGACCGAACTCTGGATTACCGGGGCCCCCTTCCTCTGAGAACCAGAGGGTTAACGCCAAAAAAAAGAATATGGAATTGGAAGTCCACAAAAATCTGCCGAAAAATTGTCTAAGCCAACTGGACCCAACTTCGTGCTTCTTTCCTCAAAATTTGGTAGAACATGTGGAGACACCACTGTTTCTACTCAACGCGGCTTATGATGTGTGGCAGGTCCGATCGAGTTTAGCCCCGGCCACAGCTGATCCCCTTGGATCTTGGAATGACTGCAAATCAAACCATGCAGAGTGTAACTCATCTCAAATTCAGTTCCTCCAAGGTGTTTTTCAATCTCTACTCGTGTGA 567 0.4568 WILINVYQALLSGCSAGGLASIIHCDEFQSLLPKPSKVKCLSDAGFFLDAIDVSGGRSLRDLFGGVVQLQTLLTSRPNSGLPGPPSSENQRVNAKKKNMELEVHKNLPKNCLSQLDPTSCFFPQNLVEHVETPLFLLNAAYDVWQVRSSLAPATADPLGSWNDCKSNHAECNSSQIQFLQGVFQSLLV 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29199g00001 188 Pfam Pectinacetylesterase 6 186 IPR004963 GO:0016787
Trme29199g00001 188 PANTHER NOTUM-RELATED 5 187 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29199g00001 Trme-Chr29199 13 1188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29199g00001 8 188 Carbohydrate Esterase AT1G57590 57.459 1.43e-66 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29199g00001 K19882 - gmx:100786972 239.58