Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2918g00001 ATGGTTCAGCGTCTCACCTATCGCAGGCGTCATAGCTACGCAACCAAATCCAATCAACACAGGGTTGTTAAAACCCCTGGTGGTAAGCTTGTTTATCAGACTACCAAGAAAAGAGCTAGTGGACCTAAGTGCCCTGTTACTGGCAAAAGAATTCAAGGAATTCCACACTTGAGGCCTACAGAGTACAAGAGATCAAGGTTGCCTAGAAACCGTAGGACTGTT 222 0.4595 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTV 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2918g00001 74 PRINTS Ribosomal protein L34 signature 66 74 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme2918g00001 74 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme2918g00001 74 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme2918g00001 74 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme2918g00001 74 Gene3D - 1 37 - -
Trme2918g00001 74 Pfam Ribosomal protein L34e 1 74 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme2918g00001 74 PANTHER 60S RIBOSOMAL PROTEIN L34 1 74 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme2918g00001 74 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Trme2918g00001 74 Gene3D - 39 74 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2918g00001 1 74 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 93.243 1.96e-46 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2918g00001 K02915 - bvg:104897921 155.221