Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29167g00001 ATGAGACTGCCGGAGTTACCCAAGATTGATATACAGTCTGTGCCTCGGCAGAAATCAAATGGTTCTGACCCAGAATCCCCCATTTCACCATTTTTAACATCTGATCCTAAGAAAGAACGTTCCCATTCACAAACTTTTAGTAGACCACATAGTCATTCTGATGATGCTTCAGTTACAACGAGAGAAAAAAGGGAAGCACGGAAGCGGAAACCACCATCACTTCAGAAGTTGATCGAGCTTAGTTTTGCCGAGTGGCTTTATGCTCTGTTAGGAAGCATTGGCGCTGCTGCCTTTGGTTCATTCAATCCCCTTCTAGCTTATGTTGTTGGCCTTGTGGTGGCAGCTTACTATAGAATTGATGATCAACATCACTTAGCACAGGAGGTAGACAAGTGGTGCTTGATCATTGGCTGCATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTATTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTAAGGAATGAAGTAGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGAGATTGGCCAATGATGCTACTTTTGTAAGAGCTGCTTTTAGCAATCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGCCTTCTCATTGGTGCTGTGCTGCACTGGCGGTTAGCACTGGTGGCTTTTGCAACCCTTCCAATTCTCTGTATTTCTGCAGTTGCCCAG 756 0.4312 MRLPELPKIDIQSVPRQKSNGSDPESPISPFLTSDPKKERSHSQTFSRPHSHSDDASVTTREKREARKRKPPSLQKLIELSFAEWLYALLGSIGAAAFGSFNPLLAYVVGLVVAAYYRIDDQHHLAQEVDKWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGAVLHWRLALVAFATLPILCISAVAQ 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29167g00001 252 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 43 250 IPR039421 -
Trme29167g00001 252 Pfam ABC transporter transmembrane region 95 250 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme29167g00001 252 CDD ABC_6TM_Pgp_ABCB1_D2_like 84 252 - -
Trme29167g00001 252 MobiDBLite consensus disorder prediction 35 70 - -
Trme29167g00001 252 MobiDBLite consensus disorder prediction 13 29 - -
Trme29167g00001 252 MobiDBLite consensus disorder prediction 1 70 - -
Trme29167g00001 252 SUPERFAMILY ABC transporter transmembrane region 72 248 IPR036640 GO:0005524|GO:0016020
Trme29167g00001 252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 89 252 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme29167g00001 252 FunFam ABC transporter B family member 6 29 252 - -
Trme29167g00001 252 Gene3D ABC transporter type 1, transmembrane domain 57 252 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29167g00001 Trme-Chr29167 201 1038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29167g00001 82 247 Calmodulin-binding Proteins AT2G36910 28.235 1.53e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29167g00001 K05658 - gmx:100779000 435.647