Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29150g00001 GGTTGGCGACCGATATTCCTTTATGGCGGGGCTGCTGTAAACAGCTCTGTAGGTGGCAAAGGATCAGCAGGAAATCAAAAGTTATATGGATCCGTGGCTTCAACCGGAGCTGGTAAGCGGTTTACGTTGGCTGAAATCAATGCTGCAACGAATAATTTCGATGAGAGTTTGGTCATTGGAGTTGGAGGCTTTGGTAAGGTGTATAAAGGAGAGGTTGATGATGGCGTGCCCGCTGCAATTAAGCGCGCCAATCCGCATTCTGAACAAGGTCTGGCTGAATTCGAGACCGAAATCGAGATGCTCTCAAAACTAAGACACAGGCATTTGGTGTCTTTGATTGGTTTCTGTGAAGAGAAAAGTGAAATGATTTTGGTTTATGAATACATGGCAAATGGAACTCTAAGAAGTCATCTATTTGGTAGCGATCTCCCTCCACTAACTTGGAAGCAACGTCTCGAAGCCTGCATCGGTGCTGCAAGGGGACTTCACTACCTTCACACAGGAGCCGACCGTGGAATAATTCACCGAGATGTCAAAACAACCAATATACTGTTAGACGAGAATTTTGTAGCGAAAATGGCTGATTTCGGTTTGTCAAAAGACGGTCCTGCTTTTGAACATACTCATGTTAGCACTGCTGTGAAAGGAAGTTTCGGCTATCTCGATCCAGAGTATTTCAGAAGACAACAGTTAACCGAGAAATCAGACGTTTACTCTTTTGGAGTTGTTCTATTCGAAGCTGTTTGTGCTAGAGCTGTGATAAACCCTACCTTGCCTAAAGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAAAGAGAAAGCCGTCCCACCATGGGAGAGGTGTTATGGCACTTGGAGTATGTCTTGCAGCTGCACGAAGCTTGGCTCAACAAGGACAACAGCGCAGATAATTCCTTCTCTAGCAGTCAAGCTTTGAGCGGTCCACAAGATGGAAGTGTTGAAGTTGCGAAGGAGCATCCAAATCAAGATGACGAGGTTGATTTGGATTCTAAAAATACAATTGGTTCAGTCTAA 1041 0.4486 GWRPIFLYGGAAVNSSVGGKGSAGNQKLYGSVASTGAGKRFTLAEINAATNNFDESLVIGVGGFGKVYKGEVDDGVPAAIKRANPHSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKSEMILVYEYMANGTLRSHLFGSDLPPLTWKQRLEACIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMADFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWAMRWQRESRPTMGEVLWHLEYVLQLHEAWLNKDNSADNSFSSSQALSGPQDGSVEVAKEHPNQDDEVDLDSKNTIGSV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29150g00001 346 Gene3D Phosphorylase Kinase; domain 1 20 128 - -
Trme29150g00001 346 Pfam Protein tyrosine and serine/threonine kinase 58 252 IPR001245 GO:0004672|GO:0006468
Trme29150g00001 346 PANTHER OS07G0166700 PROTEIN 39 275 IPR045272 GO:0004714|GO:0006468
Trme29150g00001 346 ProSiteProfiles Protein kinase domain profile. 53 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29150g00001 346 SUPERFAMILY Protein kinase-like (PK-like) 39 300 IPR011009 -
Trme29150g00001 346 MobiDBLite consensus disorder prediction 325 339 - -
Trme29150g00001 346 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524
Trme29150g00001 346 FunFam receptor-like protein kinase FERONIA 19 128 - -
Trme29150g00001 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Trme29150g00001 346 MobiDBLite consensus disorder prediction 307 346 - -
Trme29150g00001 346 Gene3D Transferase(Phosphotransferase) domain 1 129 313 - -
Trme29150g00001 346 SMART serkin_6 53 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29150g00001 Trme-Chr29150 1 1149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29150g00001 1 314 Receptor kinase-like Gene Family AT1G30570 70.000 6.27e-174 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme29150g00001 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29150g00001 - - gmx:100791403 595.119