Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29146g00001 CACCAATCGCAAGGCCACCAACAACTTCCAGCTCTATCTGGAGAAAACCATGTTGGTGTCGCTCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGTTGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCACCCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCTTCTGAAG 286 0.479 HQSQGHQQLPALSGENHVGVAPSSSANSAPAKPRMRWTPELHEAFVEAVTQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSE 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29146g00001 95 Gene3D - 31 90 - -
Trme29146g00001 95 Pfam Myb-like DNA-binding domain 34 85 IPR001005 -
Trme29146g00001 95 SUPERFAMILY Homeodomain-like 30 86 IPR009057 -
Trme29146g00001 95 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 93 IPR044848 GO:0003700
Trme29146g00001 95 MobiDBLite consensus disorder prediction 1 34 - -
Trme29146g00001 95 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 86 IPR006447 GO:0003677
Trme29146g00001 95 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Trme29146g00001 95 FunFam Myb family transcription factor 31 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29146g00001 Trme-Chr29146 659 1119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29146g00001 23 95 G2-like Transcription Factor Family AT4G28610 84.932 1.36e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme29146g00001 Myb_DNA-binding 1.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29146g00001 - - gmx:100810560 169.474