Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2913g00001 ATGTTGCTAGTGAGGCAGAAAGGTGATGCAATGAAGCAGTCTTTTGATCCTTCATTTTTTGGTCCTTCCAAGATTCCACCAATAAGTATACCTGGAACGTCAGGTCATGGTGCATTGGAAGTTTTATCTGGATCTGATTCATTTCATACTTCATCCGATGCTAGTCTCTTTTCTAGCTCATTACCTGTTCTTCCACACGAAAAATTGAACTTAAATGAAACTGAAAATGGTTTTCAATCCATTGATGATATCTCAACTAGCTTTAAAAAGCTTCATCAAGAGGAAGTGCTCAATGATTCCCTTGAAGATAGTAATAATCATGCAATCGGAACCATGCTTCCTGATGACGACGATGAGCTTTTGGCCGGCATAATGGATGATTTTGACCTAAGCGGTTTACCTGGTTCCCTTGAGGACTTGGAAGAGTATGATATTTTTGGTAGTGGTGGTGGTTTGGAACTAGAAACTGATGCACAAGAAAATCTCAGTGTGGGAATATCTAAGTTAAGCTTTTCTGATAGCTCTGTTAGCAATGGTTTGCCCCCTTATTCTTTACCCAATGGCTTGGGAGGCGGAGCCGTTGCTGGCGAACATCCATATGGAGAGCATCCTTCTCGGACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATACAGAACTGCGTATTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCGTGTAAACACAGGGGCTTTGTAATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAAAACAAACCTTTGCGGCGAAGGAAACTTGATATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCTGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGTGTGACATTGCTGGTAAACGCATAAAGCTTGAACCAAGTCGACCTGGAGGAGCTCGTCGCAAGTGCGTACGCCAATAA 1125 0.408 MLLVRQKGDAMKQSFDPSFFGPSKIPPISIPGTSGHGALEVLSGSDSFHTSSDASLFSSSLPVLPHEKLNLNETENGFQSIDDISTSFKKLHQEEVLNDSLEDSNNHAIGTMLPDDDDELLAGIMDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDAQENLSVGISKLSFSDSSVSNGLPPYSLPNGLGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLCQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRCDIAGKRIKLEPSRPGGARRKCVRQ 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2913g00001 374 Gene3D - 195 289 IPR012677 -
Trme2913g00001 374 PANTHER RNA RECOGNITION MOTIF-CONTAINING 54 369 - -
Trme2913g00001 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 364 IPR000504 GO:0003723
Trme2913g00001 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 272 IPR000504 GO:0003723
Trme2913g00001 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 358 IPR000504 GO:0003723
Trme2913g00001 374 Gene3D - 290 370 IPR012677 -
Trme2913g00001 374 CDD RRM1_MEI2_like 205 281 IPR034453 -
Trme2913g00001 374 SUPERFAMILY RNA-binding domain, RBD 203 366 IPR035979 GO:0003676
Trme2913g00001 374 FunFam MEI2-like protein 5 isoform 2 195 289 - -
Trme2913g00001 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 279 IPR000504 GO:0003723
Trme2913g00001 374 FunFam Protein MEI2-like 1 290 374 - -
Trme2913g00001 374 SMART rrm1_1 292 360 IPR000504 GO:0003723
Trme2913g00001 374 SMART rrm1_1 207 275 IPR000504 GO:0003723
Trme2913g00001 374 CDD RRM2_MEI2_like 290 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2913g00001 Trme-Chr2913 245 2438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2913g00001 201 374 Eukaryotic Initiation Factors Gene Family AT1G71770 26.768 3.75e-07 50.1