Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29133g00001 GTTGATTATTATGCCCAGCTAGACAGGTCTAAAACTGCTGTCAAGACAAAGCATGTATCAAATCATTCTGGGCACGTGCACTTGAAAAAGAAAAATGGAAATGCTACTTCTGATGACATGGGTGAATTAGTAAGACGGGAGAATAATTCTCTAGACCCTAAACATAAAAACTTTAAAATTGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTGGTCGTAGTAATTTCAGTGGTCACGAGAATGACTCAATGGCCCGAAATAAAGTGAGGAATGCATTGCGCCTGTTCCAAGCTGTTTCTAGAAAGCTTTTGCAGGAAGCGGAATCAAAAGCAAAGTCAAACGAGAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCGAAAATACTTAAGGAGAAAGGGAACTATGTTAACGAAGGGGATAAGATCTTGGGATCTGTCCCCGGGGTTGAAGTCGGTGATGAATTTCAATACAGAATAGAGCTTAATGTAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAAGCAGAAAAATAAAGTCCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATTCTGATGAATTAGATAATACAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAAGAACAGCAGTGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCGGAATCAATGGATGGAAAAAGCAAGATATATGTTTATGATGGACTTTATCTAGTTGAGTCATGTTGGCAGGAAATGGGGTCACATGGGAAGCTGGTTTATAAGTTTCGCTTGCGAAGAATCCCAGGTCAACCAGAGCTTGCCTTGAAGGAACTGAAGAAATCTAAAAAGTTCAAAATAAGAGAAGGTCAATGCGTCAAAGATATTTCCTACGGTAAAGAGAGAATCCCCATATGTGCTAAGGCTGTGGTTGTACTAATGGATGCTCTGACCATGCAAAATGTTCCTGTGTACTAA 1041 0.4054 VDYYAQLDRSKTAVKTKHVSNHSGHVHLKKKNGNATSDDMGELVRRENNSLDPKHKNFKIVPKSHGVNVPPLGRSNFSGHENDSMARNKVRNALRLFQAVSRKLLQEAESKAKSNEKERRRFDLQAAKILKEKGNYVNEGDKILGSVPGVEVGDEFQYRIELNVIGLHRQIQGGIDYVKQKNKVLATSIVASGGYSDELDNTDVLIYTGQGGNVMSSDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKSKIYVYDGLYLVESCWQEMGSHGKLVYKFRLRRIPGQPELALKELKKSKKFKIREGQCVKDISYGKERIPICAKAVVVLMDALTMQNVPVY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29133g00001 346 Coils Coil 105 125 - -
Trme29133g00001 346 ProSiteProfiles YDG domain profile. 145 288 IPR003105 -
Trme29133g00001 346 Gene3D - 126 311 IPR036987 -
Trme29133g00001 346 SUPERFAMILY PUA domain-like 129 300 IPR015947 -
Trme29133g00001 346 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 330 - -
Trme29133g00001 346 SMART G9a_1 140 292 IPR003105 -
Trme29133g00001 346 MobiDBLite consensus disorder prediction 17 39 - -
Trme29133g00001 346 Pfam SAD/SRA domain 144 292 IPR003105 -
Trme29133g00001 346 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 126 305 - -
Trme29133g00001 346 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29133g00001 Trme-Chr29133 1 1129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29133g00001 87 346 Su(var)3-9 homologs AT5G04940 39.925 5.39e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29133g00001 K11420 - tpra:123908193 558.14