Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29129g00001 GTCTCTGGTGGGGAGCATGTGGATGTCGTAATAGGTGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAAGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTATCTGCGTTAGTTCTACCCAAGGTTTTTGCCGAGCTTCCTTCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGCCAGGAAATGCGGACCTATCAAATGCATGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTATTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGATCTCGCGAAGACCGTTCTGGCATACATTCAGTCTAGGGGGCGTGCTAGAAAGCCTGGGTCTGATTACATCCTAATGGTTGAGAGCATTAGTTCCGTCATGGTGAAAGATTCAGATAGCCCATTCAACCAGTGTAACTAG 510 0.4608 VSGGEHVDVVIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVESISSVMVKDSDSPFNQCN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29129g00001 169 PANTHER DICER-RELATED 6 152 - -
Trme29129g00001 169 Gene3D - 14 161 IPR027417 -
Trme29129g00001 169 SMART helicmild6 56 142 IPR001650 -
Trme29129g00001 169 CDD SF2_C_dicer 20 150 - -
Trme29129g00001 169 Pfam Helicase conserved C-terminal domain 23 140 IPR001650 -
Trme29129g00001 169 FunFam Endoribonuclease dicer-like 1 14 162 - -
Trme29129g00001 169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 146 IPR027417 -
Trme29129g00001 169 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 26 169 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29129g00001 Trme-Chr29129 287 1189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29129g00001 39 144 Eukaryotic Initiation Factors Gene Family AT5G11170 32.110 4.16e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29129g00001 K11592 - gmx:100780953 279.256