Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme291109g00001 ATGATTGACATGGATAGGTTTGTTGAATTAGGCTCTTTCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCAGCAATTCTGATTGATGCTGCCCGCATGGTGACACAGTTGCGGGGTGAAGCCCAGAAGTTGAAAGACTCAAATTCAAATCTTCAAGAGAAGATTAAAGAGTTGAAGTACTTCATCGTATCAGTGGCTAAAATATCAGATTGA 216 0.4259 MIDMDRFVELGSFLEPGRPPKTDKAAILIDAARMVTQLRGEAQKLKDSNSNLQEKIKELKYFIVSVAKISD 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme291109g00001 71 PANTHER BHLH TRANSCRIPTION FACTOR 5 60 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trme291109g00001 71 Gene3D - 4 60 IPR036638 GO:0046983
Trme291109g00001 71 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 64 IPR036638 GO:0046983
Trme291109g00001 71 Coils Coil 35 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme291109g00001 Trme-Chr291109 11 324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme291109g00001 5 60 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 83.929 1.25e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme291109g00001 - - qsu:112027386 105.145