Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2909g00001 ATGGCAAAGTTCCTAGTTATCACTGATGGTAACCCTCTTTTTGTTAATAAAACTAGAACGAGTCCCGTTCCTATTAGCAGTCCACCGCCTTTAAGTGGTCCACCTTCACCACACATTGTGTYGCCGCCGCCACTGCCATTGCCATCTCCATCGCCATCCTCCGTTATTCCACATTCCTCTAGTCAAAGTCCAAGCTCTAATCAATCTAGGAACGTCGAATCAAAGGCTCAACCRAGTAACTCACATACATTCAAAACAGTAGCTATAGTGTCTGGAGTTGCAGCCGCATTGGTAGCTCTTTTGGTTATTTTTCTCTTAAAATGCTGTTGTATGAAGAAGAAAAAAGGTTCAATTGATGGTTTAAGTTCTGTTTTGGTTAAAACTCAAGATCCATCCAATCCAAACGCGATGGTTAAATTTGCCGTGTCAGATAGCAGCAACACTGGGAGCTTATCGACAACTACAGGAACAAGTTCTCTAACTAGTGGCGAAACCGGAAACTATCATGTAGTTGACTCCGGTAACCTTGTCATCTCAGTTCAAGTTATACGCAAGGTCACAAACAATTTTTCTTCGGAAAATGAGCTCGGCCGTGGAGGATTTGGAACCGTTTACAAAGGTGAACTGGAAGATGGAACAAAAATAGCAGTGAAAAGAATGGAATGTGGAATTATTAGCAGTAAAGGAATTGATGAGTTTCAAGCCGAAATAGATGTTCTTTCGAAGGTTCGGCACCGACATTTGGTATCCCTTCTAGGCTATTCCATTGAAGGAAATGAGAGGCTTTTGGTTTATGAATACATGCCTCTTGGTGCTTTAAGCAGACATCTTTTCCATTGGAAAAGCTTGAATTTGGACCCTTTGTCTTGGCCACATAGGCTTGCAATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCATAGTCTTGCTCGACAGACCTTCATCCATCGAGATCTCAAGTCTTCGAATATCCTACTTGGAGATGACATTCGAGCGAAAGTTTCTGATTTTGGTTTGGTGAAACTTGCACCAGATGGTGAAAAGTCTATGGCAACAAGACTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACGACTAAAGTGGACGTTTTCAGCTAYGGTGTGGTGTTGATGGAACTTCTGACTGGATTAATGGCTCTTGACGAGAGCCGACCAGAGGAAAACCGATACTTAGCCGAATGGTTTTGGCAAATTAAATCAAACAAAGAAAAGCTTATGGCTGCCATCGATCCAGCACTTGAAGTAACTGAAGAGACTTTCGAGAGTATTTCCACTGTAGCTGAACTTGCCGGACATTGCACTGCTAGGGAAGCAAATCATAGGCCAGATATGGGACATGCAGTCAAGGTGCTGTCGGAATTAGTAGAGAAATGGAGACCAGTTGACGAAGAATTCGATTATAGCGGTGG 1454 0.4285 MAKFLVITDGNPLFVNKTRTSPVPISSPPPLSGPPSPHIVXPPPLPLPSPSPSSVIPHSSSQSPSSNQSRNVESKAQPSNSHTFKTVAIVSGVAAALVALLVIFLLKCCCMKKKKGSIDGLSSVLVKTQDPSNPNAMVKFAVSDSSNTGSLSTTTGTSSLTSGETGNYHVVDSGNLVISVQVIRKVTNNFSSENELGRGGFGTVYKGELEDGTKIAVKRMECGIISSKGIDEFQAEIDVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLNLDPLSWPHRLAIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDIRAKVSDFGLVKLAPDGEKSMATRLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEENRYLAEWFWQIKSNKEKLMAAIDPALEVTEETFESISTVAELAGHCTAREANHRPDMGHAVKVLSELVEKWRPVDEEFDYSGG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2909g00001 485 MobiDBLite consensus disorder prediction 23 53 - -
Trme2909g00001 485 Gene3D Phosphorylase Kinase; domain 1 151 267 - -
Trme2909g00001 485 SUPERFAMILY Protein kinase-like (PK-like) 169 466 IPR011009 -
Trme2909g00001 485 MobiDBLite consensus disorder prediction 54 78 - -
Trme2909g00001 485 CDD STKc_IRAK 196 469 - -
Trme2909g00001 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Trme2909g00001 485 Pfam Protein tyrosine and serine/threonine kinase 193 464 IPR001245 GO:0004672|GO:0006468
Trme2909g00001 485 ProSiteProfiles Protein kinase domain profile. 190 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2909g00001 485 PANTHER OSJNBA0070M12.3 PROTEIN 44 481 - -
Trme2909g00001 485 ProSitePatterns Protein kinases ATP-binding region signature. 196 218 IPR017441 GO:0005524
Trme2909g00001 485 FunFam receptor protein kinase TMK1 152 267 - -
Trme2909g00001 485 MobiDBLite consensus disorder prediction 16 78 - -
Trme2909g00001 485 SMART serkin_6 190 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2909g00001 485 FunFam receptor protein kinase TMK1 268 485 - -
Trme2909g00001 485 Gene3D Transferase(Phosphotransferase) domain 1 268 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2909g00001 Trme-Chr2909 1 2485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2909g00001 55 474 Trihelix Transcription Factor Family AT1G68690 38.928 5.84e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme2909g00001 PK_Tyr_Ser-Thr 2.3e-46 CL0016