Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29091g00001 ATGATGTTATCTAGAACAATGAATAGAGGAATTGAAGTTCTATCTCCAGCTTCCTATATCCAAAATTCCAATTGGTTGTTTGAAGAAAACAAGGGTTCTAAGTGGACTCAAGAAGAGAATAAGCTGTTTGAGAATGCTTTAGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTAGCAGAGATGATTCCTGGAAAAACTGTAGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCCGGTTTGATACCGGTTCCTGGTTATACAACTAGTTCTTTCACATTGGATTGGGATAACAATCAAGGCTTTGATGAGTTTAAGCAATTTTGTAGTGTTGGTGAGAAAAGGGGCGGTTCGACTCGGCCGTCTGAGCAGGAAAGGAAGAAAGGTGTGCCTTGGACTGAAGAGGAGCATAGGTAA 447 0.3982 MMLSRTMNRGIEVLSPASYIQNSNWLFEENKGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNNQGFDEFKQFCSVGEKRGGSTRPSEQERKKGVPWTEEEHR 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29091g00001 148 CDD SANT 34 80 IPR001005 -
Trme29091g00001 148 MobiDBLite consensus disorder prediction 128 148 - -
Trme29091g00001 148 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 29 148 IPR043363 -
Trme29091g00001 148 Gene3D - 22 94 - -
Trme29091g00001 148 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Trme29091g00001 148 MobiDBLite consensus disorder prediction 123 148 - -
Trme29091g00001 148 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Trme29091g00001 148 FunFam Transcription factor SRM1 22 94 - -
Trme29091g00001 148 SMART sant 31 83 IPR001005 -
Trme29091g00001 148 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29091g00001 Trme-Chr29091 252 698 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme29091g00001 Myb_DNA-binding 7.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29091g00001 - - gmx:100775697 266.159