Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29073g00002 ATGGAACTTGAAGATCAAATGGAGCAGTTGAGTGTAGAAGCAGGCGCATGGCAACAGCGAGCCAGATACAACGAAAACATGATTGCTGCCCTCAAGTTTAACCTCCAACAAGCATACCTCCAAACTAGAGATAGTAAAGAAGGATGCGGTGACAGCGAGGTAGATGATACAGCTTCTTGCTGTAATGGTCGTTCGCTTGATTTTCATCTGCTCTCCAACGAAAATTCCAATATGCAAGACATGTTGAAATGCAAGGCTTGCAGAGTCAATGAAGTGACCATGGTTTTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGCGAAAGTAAGCTTAGTTTTTGTCCTCTATGTCAATCCTCTAAATTCATCGGCATGGAGGTCTATATGTAA 393 0.4198 MELEDQMEQLSVEAGAWQQRARYNENMIAALKFNLQQAYLQTRDSKEGCGDSEVDDTASCCNGRSLDFHLLSNENSNMQDMLKCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29073g00002 130 ProSiteProfiles Zinc finger RING-type profile. 84 119 IPR001841 -
Trme29073g00002 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 130 IPR013083 -
Trme29073g00002 130 Pfam Zinc finger, C3HC4 type (RING finger) 82 120 - -
Trme29073g00002 130 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 65 130 - -
Trme29073g00002 130 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 128 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29073g00002 Trme-Chr29073 765 1157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29073g00002 84 119 C3H Transcription Factor Family AT1G73950 44.444 7.19e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29073g00002 K19042 - gmx:100811918 255.758