Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29072g00001 GATAGACTCACCATTGAGTACGGAAACAAGGATAGCGGCATCAAGATGGCTCTTGATGGCTGCAATGAGATGATGCAGTTTGCTTTGGACAGTCTCGATCTCTCCACCACTGTGGTTCGTGACAACAACATTCAATTTGTTCATGCTCAAAATGCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTATAAACAAGCTTGCATGGAAGGATTTGACGATGAAAAAGAGGGTGAGAAGAAGATTAAGGATCAATTTCATGCTCAGACTATAGACCGCGCGACAAAGGTCACCATTGTTGCTCTCGACATTGTGTCTGATTTGTCCAACATACTCCAAGAATTCGGTTTGAAATTAGATCTCAAACCTTCCTCTCGTCGTCTTCTATACGAGGAAATTGATAATGAGGAAGGATTCCCTACATGGGTCTCCGCTACTGATCGCAAGCTTTTGGCTCAAATGCAAAGAAAAGATTGGAGATCAAATGTTAAGCCTAATGTTGTTGTTTCCAAGGATGGTACTGGCCAATTTAATAACATTAGAGATGCTCTGAAGAATTACCCTAAGGGAAACAAAGGAAGATATATTATCTACGTTAAGGCTGGTGTCTATGACGATTGGGTCAATGTCACCAAAGAGTGCAAATACGTGCTTATGTACGGTGATGGCCCTGAAAGGACCATTATCACCGGTAAAATGAACAATGCCATAAATGGTATCAAGACCATGTATACCGCCACCTTTACCAACGAAGCAATTGGGTTCATTGCAAGGGAAATGACATTTCAGAACACAGCCGGTCCTATAGGTCATCAAGCTGTTGCTTTGAGAAACCACGGAGATATGTCTGCTATCGTTGGTTGCCATATCTTGGGTTACCAAGACACCTTGTACGCTCACGCCAACAGACAATTCTACCGCGACTGTGTTATCTCTGGTACCATCGATTTCATCTTTGGAACATCTCGCACCATGATCCAAAACTCTAAGATCGTCGTAAGGAAGCCCCTGGTTGGACAATCCAACACAATTACCGCTGACGGAACAGAGAATTTTAAGAACCCCTACACTGGTATTGTGATCCAGAACTGCCAGATCATC 1101 0.4305 DRLTIEYGNKDSGIKMALDGCNEMMQFALDSLDLSTTVVRDNNIQFVHAQNADLRNWLSAVISYKQACMEGFDDEKEGEKKIKDQFHAQTIDRATKVTIVALDIVSDLSNILQEFGLKLDLKPSSRRLLYEEIDNEEGFPTWVSATDRKLLAQMQRKDWRSNVKPNVVVSKDGTGQFNNIRDALKNYPKGNKGRYIIYVKAGVYDDWVNVTKECKYVLMYGDGPERTIITGKMNNAINGIKTMYTATFTNEAIGFIAREMTFQNTAGPIGHQAVALRNHGDMSAIVGCHILGYQDTLYAHANRQFYRDCVISGTIDFIFGTSRTMIQNSKIVVRKPLVGQSNTITADGTENFKNPYTGIVIQNCQII 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29072g00001 367 Gene3D - 121 367 IPR012334 -
Trme29072g00001 367 ProSitePatterns Pectinesterase signature 2. 311 320 IPR033131 -
Trme29072g00001 367 Pfam Pectinesterase 166 366 IPR000070 GO:0030599|GO:0042545
Trme29072g00001 367 Pfam Plant invertase/pectin methylesterase inhibitor 13 104 IPR006501 GO:0004857
Trme29072g00001 367 PANTHER PECTINESTERASE 12 367 - -
Trme29072g00001 367 FunFam Putative pectinesterase 57 163 364 - -
Trme29072g00001 367 SUPERFAMILY Pectin lyase-like 163 366 IPR011050 -
Trme29072g00001 367 CDD PMEI-like_3 9 110 - -
Trme29072g00001 367 Gene3D Invertase/pectin methylesterase inhibitor family protein 3 110 IPR035513 -
Trme29072g00001 367 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 8 107 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29072g00001 Trme-Chr29072 2 1191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29072g00001 2 366 Carbohydrate Esterase AT5G49180 41.576 1.54e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29072g00001 K01051 - gmx:100781507 482.641